Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4273 and GFF4274 are separated by 35 nucleotides GFF4274 and GFF4275 are separated by 60 nucleotides
GFF4273 - BUG/TctC family periplasmic protein, at 193,291 to 194,259
GFF4273
GFF4274 - Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases, at 194,295 to 195,011
GFF4274
GFF4275 - 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases, at 195,072 to 196,718
GFF4275
Position (kb) 194
195
196 Strain fitness (log2 ratio) -2
-1
0
1
2 at 193.386 kb on - strand at 193.386 kb on - strand at 193.782 kb on - strand, within GFF4273 at 193.782 kb on - strand, within GFF4273 at 193.782 kb on - strand, within GFF4273 at 193.805 kb on - strand, within GFF4273 at 193.997 kb on + strand, within GFF4273 at 193.998 kb on - strand, within GFF4273 at 194.276 kb on + strand at 194.276 kb on + strand at 194.276 kb on + strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.277 kb on - strand at 194.278 kb on + strand at 194.445 kb on + strand, within GFF4274 at 194.605 kb on + strand, within GFF4274 at 194.605 kb on + strand, within GFF4274 at 194.606 kb on - strand, within GFF4274 at 194.606 kb on - strand, within GFF4274 at 194.798 kb on + strand, within GFF4274 at 194.852 kb on - strand, within GFF4274 at 194.879 kb on - strand, within GFF4274 at 195.299 kb on - strand, within GFF4275 at 195.448 kb on + strand, within GFF4275 at 195.448 kb on + strand, within GFF4275 at 195.448 kb on + strand, within GFF4275 at 195.449 kb on - strand, within GFF4275 at 195.451 kb on + strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.452 kb on - strand, within GFF4275 at 195.481 kb on + strand, within GFF4275 at 195.482 kb on - strand, within GFF4275 at 195.502 kb on + strand, within GFF4275 at 195.502 kb on + strand, within GFF4275 at 195.871 kb on + strand, within GFF4275 at 195.958 kb on + strand, within GFF4275 at 195.959 kb on - strand, within GFF4275 at 195.959 kb on - strand, within GFF4275 at 195.997 kb on + strand, within GFF4275
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 193,386 - -0.4 193,386 - -0.8 193,782 - GFF4273 0.51 -1.3 193,782 - GFF4273 0.51 +1.3 193,782 - GFF4273 0.51 -0.7 193,805 - GFF4273 0.53 -0.2 193,997 + GFF4273 0.73 -0.1 193,998 - GFF4273 0.73 -1.2 194,276 + +0.1 194,276 + -0.1 194,276 + -0.2 194,277 - -0.3 194,277 - -0.5 194,277 - -1.9 194,277 - -1.3 194,278 + -0.7 194,445 + GFF4274 0.21 +1.1 194,605 + GFF4274 0.43 -1.5 194,605 + GFF4274 0.43 -2.0 194,606 - GFF4274 0.43 -0.7 194,606 - GFF4274 0.43 -1.5 194,798 + GFF4274 0.70 -0.7 194,852 - GFF4274 0.78 -0.9 194,879 - GFF4274 0.81 -1.5 195,299 - GFF4275 0.14 -1.3 195,448 + GFF4275 0.23 -1.5 195,448 + GFF4275 0.23 -0.9 195,448 + GFF4275 0.23 -0.7 195,449 - GFF4275 0.23 +0.4 195,451 + GFF4275 0.23 +0.3 195,452 - GFF4275 0.23 -1.4 195,452 - GFF4275 0.23 -0.5 195,452 - GFF4275 0.23 +0.3 195,452 - GFF4275 0.23 -0.7 195,481 + GFF4275 0.25 +2.2 195,482 - GFF4275 0.25 -0.4 195,502 + GFF4275 0.26 -1.0 195,502 + GFF4275 0.26 -0.8 195,871 + GFF4275 0.49 -2.3 195,958 + GFF4275 0.54 +0.8 195,959 - GFF4275 0.54 +1.8 195,959 - GFF4275 0.54 -1.1 195,997 + GFF4275 0.56 -1.4
Or see this region's nucleotide sequence