Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4252 and GFF4253 are separated by 132 nucleotides GFF4253 and GFF4254 are separated by 152 nucleotides GFF4254 and GFF4255 overlap by 4 nucleotides
GFF4252 - hypothetical protein, at 166,977 to 168,728
GFF4252
GFF4253 - hypothetical protein, at 168,861 to 169,838
GFF4253
GFF4254 - hypothetical protein, at 169,991 to 170,362
GFF4254
GFF4255 - no description, at 170,359 to 171,402
GFF4255
Position (kb) 168
169
170 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 167.891 kb on - strand, within GFF4252 at 167.891 kb on - strand, within GFF4252 at 167.935 kb on + strand, within GFF4252 at 167.936 kb on - strand, within GFF4252 at 168.037 kb on + strand, within GFF4252 at 168.037 kb on + strand, within GFF4252 at 168.037 kb on + strand, within GFF4252 at 168.038 kb on - strand, within GFF4252 at 168.038 kb on - strand, within GFF4252 at 168.038 kb on - strand, within GFF4252 at 168.038 kb on - strand, within GFF4252 at 168.038 kb on - strand, within GFF4252 at 168.038 kb on - strand, within GFF4252 at 168.038 kb on - strand, within GFF4252 at 168.071 kb on - strand, within GFF4252 at 168.219 kb on + strand, within GFF4252 at 168.219 kb on + strand, within GFF4252 at 168.219 kb on + strand, within GFF4252 at 168.220 kb on - strand, within GFF4252 at 168.220 kb on - strand, within GFF4252 at 168.220 kb on - strand, within GFF4252 at 168.326 kb on - strand, within GFF4252 at 168.740 kb on + strand at 168.741 kb on - strand at 168.741 kb on - strand at 168.780 kb on - strand at 168.780 kb on - strand at 168.780 kb on - strand at 168.780 kb on - strand at 168.780 kb on - strand at 168.780 kb on - strand at 169.191 kb on + strand, within GFF4253 at 169.192 kb on - strand, within GFF4253 at 169.192 kb on - strand, within GFF4253 at 169.192 kb on - strand, within GFF4253 at 169.233 kb on + strand, within GFF4253 at 169.233 kb on + strand, within GFF4253 at 169.234 kb on - strand, within GFF4253 at 169.234 kb on - strand, within GFF4253 at 169.234 kb on - strand, within GFF4253 at 169.242 kb on + strand, within GFF4253 at 169.596 kb on + strand, within GFF4253 at 169.597 kb on - strand, within GFF4253 at 169.597 kb on - strand, within GFF4253 at 169.764 kb on + strand at 169.803 kb on + strand at 169.804 kb on - strand at 169.926 kb on + strand at 169.926 kb on + strand at 169.926 kb on + strand at 169.926 kb on + strand at 169.927 kb on - strand at 169.927 kb on - strand at 169.927 kb on - strand at 170.156 kb on + strand, within GFF4254 at 170.270 kb on + strand, within GFF4254 at 170.271 kb on - strand, within GFF4254 at 170.360 kb on + strand at 170.360 kb on + strand at 170.360 kb on + strand at 170.360 kb on + strand at 170.360 kb on + strand at 170.361 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 167,891 - GFF4252 0.52 +0.9 167,891 - GFF4252 0.52 +0.8 167,935 + GFF4252 0.55 -0.5 167,936 - GFF4252 0.55 -2.3 168,037 + GFF4252 0.61 -1.3 168,037 + GFF4252 0.61 +0.3 168,037 + GFF4252 0.61 -1.0 168,038 - GFF4252 0.61 -2.3 168,038 - GFF4252 0.61 -0.7 168,038 - GFF4252 0.61 +1.0 168,038 - GFF4252 0.61 +1.8 168,038 - GFF4252 0.61 +2.9 168,038 - GFF4252 0.61 -3.3 168,038 - GFF4252 0.61 -0.2 168,071 - GFF4252 0.62 -3.4 168,219 + GFF4252 0.71 -2.3 168,219 + GFF4252 0.71 +0.3 168,219 + GFF4252 0.71 -1.2 168,220 - GFF4252 0.71 -1.3 168,220 - GFF4252 0.71 -1.7 168,220 - GFF4252 0.71 +0.3 168,326 - GFF4252 0.77 -1.2 168,740 + -2.1 168,741 - +1.3 168,741 - +1.5 168,780 - -1.5 168,780 - -1.0 168,780 - -0.0 168,780 - +2.0 168,780 - -1.2 168,780 - -0.7 169,191 + GFF4253 0.34 +1.7 169,192 - GFF4253 0.34 +0.8 169,192 - GFF4253 0.34 -0.2 169,192 - GFF4253 0.34 +2.3 169,233 + GFF4253 0.38 -0.6 169,233 + GFF4253 0.38 -0.2 169,234 - GFF4253 0.38 +1.6 169,234 - GFF4253 0.38 -0.7 169,234 - GFF4253 0.38 -1.9 169,242 + GFF4253 0.39 -0.4 169,596 + GFF4253 0.75 -2.6 169,597 - GFF4253 0.75 +1.2 169,597 - GFF4253 0.75 -3.4 169,764 + -1.1 169,803 + +0.8 169,804 - +1.0 169,926 + +1.8 169,926 + +0.8 169,926 + -0.3 169,926 + -2.7 169,927 - -1.6 169,927 - +1.1 169,927 - +1.8 170,156 + GFF4254 0.44 +3.6 170,270 + GFF4254 0.75 -0.6 170,271 - GFF4254 0.75 -2.3 170,360 + -0.2 170,360 + +0.5 170,360 + -0.7 170,360 + +0.3 170,360 + -1.3 170,361 - -0.3
Or see this region's nucleotide sequence