Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4201 and GFF4202 overlap by 4 nucleotides GFF4202 and GFF4203 are separated by 1 nucleotides GFF4203 and GFF4204 overlap by 4 nucleotides GFF4204 and GFF4205 overlap by 4 nucleotides
GFF4201 - Acyl-CoA dehydrogenase, at 116,502 to 117,614
GFF4201
GFF4202 - Enoyl-CoA hydratase (EC 4.2.1.17), at 117,611 to 118,372
GFF4202
GFF4203 - Acetyl-CoA synthetase (ADP-forming) alpha and beta chains, putative, at 118,374 to 120,509
GFF4203
GFF4204 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 120,506 to 121,264
GFF4204
GFF4205 - hypothetical protein, at 121,261 to 121,641
GFF4205
Position (kb) 118
119
120
121 Strain fitness (log2 ratio) -2
-1
0
1
2 at 118.109 kb on + strand, within GFF4202 at 118.109 kb on + strand, within GFF4202 at 118.110 kb on - strand, within GFF4202 at 118.358 kb on + strand at 118.358 kb on + strand at 118.358 kb on + strand at 118.497 kb on + strand at 118.498 kb on - strand at 118.498 kb on - strand at 118.498 kb on - strand at 118.503 kb on + strand at 119.197 kb on + strand, within GFF4203 at 119.197 kb on + strand, within GFF4203 at 121.041 kb on + strand, within GFF4204 at 121.041 kb on + strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204 at 121.042 kb on - strand, within GFF4204
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 118,109 + GFF4202 0.65 -1.5 118,109 + GFF4202 0.65 +0.7 118,110 - GFF4202 0.65 +1.8 118,358 + +0.2 118,358 + -1.4 118,358 + +1.8 118,497 + -1.4 118,498 - -0.9 118,498 - -1.7 118,498 - -0.2 118,503 + -0.1 119,197 + GFF4203 0.39 -2.4 119,197 + GFF4203 0.39 -0.7 121,041 + GFF4204 0.70 -1.2 121,041 + GFF4204 0.70 +0.7 121,042 - GFF4204 0.71 +0.9 121,042 - GFF4204 0.71 +0.5 121,042 - GFF4204 0.71 -1.0
Or see this region's nucleotide sequence