Strain Fitness in Variovorax sp. SCN45 around GFF4182

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
86,354	-				+2.9
86,378	-				+0.8
86,378	-				-0.7
86,378	-				-0.2
86,378	-				-0.2
86,378	-				-0.2
86,391	+				-0.5
86,391	+				-1.3
86,392	-				-0.2
86,392	-				-0.3
86,392	-				+1.1
86,395	+				+0.2
87,024	+		GFF4181	0.59	+0.3
87,024	+		GFF4181	0.59	+2.4
87,024	+		GFF4181	0.59	-2.3
87,025	-		GFF4181	0.59	-0.4
87,308	+				-1.1
87,308	+				-1.3
87,309	-				-0.6
87,437	+		GFF4182	0.34	-0.4
87,438	-		GFF4182	0.34	+0.1
87,717	-		GFF4182	0.89	-1.3
88,053	+		GFF4183	0.16	-2.5
88,053	+		GFF4183	0.16	-3.4
88,054	-		GFF4183	0.16	-1.0
88,054	-		GFF4183	0.16	+0.1
88,054	-		GFF4183	0.16	-1.0
88,448	+		GFF4183	0.56	-0.7
88,605	+		GFF4183	0.71	-0.6
88,606	-		GFF4183	0.72	+0.3
88,729	-		GFF4183	0.84	-3.1