Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4164 and GFF4165 are separated by 14 nucleotides GFF4165 and GFF4166 overlap by 11 nucleotides GFF4166 and GFF4167 overlap by 4 nucleotides
GFF4164 - Thymidine phosphorylase (EC 2.4.2.4), at 68,913 to 70,232
GFF4164
GFF4165 - Deoxyribose-phosphate aldolase (EC 4.1.2.4), at 70,247 to 71,041
GFF4165
GFF4166 - Cytidine deaminase (EC 3.5.4.5), at 71,031 to 71,501
GFF4166
GFF4167 - ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) / ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines), at 71,498 to 73,120
GFF4167
Position (kb) 71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 70.097 kb on - strand, within GFF4164 at 70.097 kb on - strand, within GFF4164 at 70.404 kb on + strand, within GFF4165 at 71.419 kb on + strand, within GFF4166 at 71.566 kb on - strand at 72.314 kb on + strand, within GFF4167 at 72.314 kb on + strand, within GFF4167 at 72.366 kb on + strand, within GFF4167 at 72.366 kb on + strand, within GFF4167 at 72.367 kb on - strand, within GFF4167 at 72.367 kb on - strand, within GFF4167 at 72.367 kb on - strand, within GFF4167
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 70,097 - GFF4164 0.90 +0.8 70,097 - GFF4164 0.90 -0.5 70,404 + GFF4165 0.20 -1.6 71,419 + GFF4166 0.82 -2.3 71,566 - -2.1 72,314 + GFF4167 0.50 -0.4 72,314 + GFF4167 0.50 -1.3 72,366 + GFF4167 0.53 +1.4 72,366 + GFF4167 0.53 +0.0 72,367 - GFF4167 0.54 +0.3 72,367 - GFF4167 0.54 -3.3 72,367 - GFF4167 0.54 -0.7
Or see this region's nucleotide sequence