Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4143 and GFF4144 are separated by 55 nucleotides GFF4144 and GFF4145 are separated by 77 nucleotides GFF4145 and GFF4146 are separated by 82 nucleotides
GFF4143 - Dihydrofolate reductase (EC 1.5.1.3), at 50,666 to 51,238
GFF4143
GFF4144 - Prolyl endopeptidase (EC 3.4.21.26), at 51,294 to 51,686
GFF4144
GFF4145 - transcriptional regulators-like protein, at 51,764 to 52,654
GFF4145
GFF4146 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 52,737 to 53,672
GFF4146
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 51.142 kb on - strand, within GFF4143 at 51.142 kb on - strand, within GFF4143 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.460 kb on + strand, within GFF4144 at 51.461 kb on - strand, within GFF4144 at 51.461 kb on - strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.625 kb on + strand, within GFF4144 at 51.626 kb on - strand, within GFF4144 at 51.734 kb on - strand at 51.734 kb on - strand at 51.982 kb on - strand, within GFF4145 at 52.691 kb on - strand at 52.691 kb on - strand at 52.692 kb on + strand at 52.692 kb on + strand at 53.008 kb on - strand, within GFF4146 at 53.008 kb on - strand, within GFF4146 at 53.253 kb on + strand, within GFF4146
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 51,142 - GFF4143 0.83 -1.3 51,142 - GFF4143 0.83 +0.3 51,460 + GFF4144 0.42 +0.1 51,460 + GFF4144 0.42 -0.3 51,460 + GFF4144 0.42 +1.1 51,460 + GFF4144 0.42 -2.3 51,460 + GFF4144 0.42 -1.7 51,461 - GFF4144 0.42 +0.8 51,461 - GFF4144 0.42 -0.5 51,625 + GFF4144 0.84 +0.4 51,625 + GFF4144 0.84 -1.5 51,625 + GFF4144 0.84 +0.3 51,626 - GFF4144 0.84 -2.5 51,734 - +0.6 51,734 - -0.7 51,982 - GFF4145 0.24 -2.5 52,691 - +0.3 52,691 - -1.3 52,692 + -1.0 52,692 + +1.5 53,008 - GFF4146 0.29 -0.2 53,008 - GFF4146 0.29 -2.8 53,253 + GFF4146 0.55 +0.1
Or see this region's nucleotide sequence