Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4131 and GFF4132 are separated by 125 nucleotides GFF4132 and GFF4133 are separated by 103 nucleotides
GFF4131 - ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines), at 36,478 to 38,142
GFF4131
GFF4132 - Acyl-CoA dehydrogenase; probable dibenzothiophene desulfurization enzyme, at 38,268 to 39,500
GFF4132
GFF4133 - Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases; sulfonate monooxygenase, at 39,604 to 40,788
GFF4133
Position (kb) 38
39
40 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 37.719 kb on - strand, within GFF4131 at 37.787 kb on + strand, within GFF4131 at 37.788 kb on - strand, within GFF4131 at 37.857 kb on - strand, within GFF4131 at 37.955 kb on + strand, within GFF4131 at 37.955 kb on + strand, within GFF4131 at 38.137 kb on + strand at 38.559 kb on + strand, within GFF4132 at 38.745 kb on + strand, within GFF4132 at 38.746 kb on - strand, within GFF4132 at 38.746 kb on - strand, within GFF4132 at 39.054 kb on + strand, within GFF4132 at 39.055 kb on - strand, within GFF4132 at 39.055 kb on - strand, within GFF4132 at 39.596 kb on - strand at 39.596 kb on - strand at 39.791 kb on - strand, within GFF4133 at 40.129 kb on + strand, within GFF4133 at 40.492 kb on + strand, within GFF4133
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 37,719 - GFF4131 0.75 -1.3 37,787 + GFF4131 0.79 -0.2 37,788 - GFF4131 0.79 -0.0 37,857 - GFF4131 0.83 -1.5 37,955 + GFF4131 0.89 -2.2 37,955 + GFF4131 0.89 -0.2 38,137 + -2.7 38,559 + GFF4132 0.24 -0.7 38,745 + GFF4132 0.39 -1.9 38,746 - GFF4132 0.39 -2.8 38,746 - GFF4132 0.39 -1.9 39,054 + GFF4132 0.64 -0.2 39,055 - GFF4132 0.64 -1.5 39,055 - GFF4132 0.64 -2.3 39,596 - +1.0 39,596 - -2.0 39,791 - GFF4133 0.16 -0.2 40,129 + GFF4133 0.44 -1.3 40,492 + GFF4133 0.75 -2.9
Or see this region's nucleotide sequence