Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4042 and GFF4043 overlap by 4 nucleotides GFF4043 and GFF4044 are separated by 807 nucleotides
GFF4042 - Copper-sensing two-component system response regulator CusR, at 253,094 to 253,777
GFF4042
GFF4043 - Copper sensory histidine kinase CusS, at 253,774 to 255,102
GFF4043
GFF4044 - hypothetical protein, at 255,910 to 256,335
GFF4044
Position (kb) 253
254
255
256 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 252.981 kb on - strand at 252.981 kb on - strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.990 kb on + strand at 252.991 kb on - strand at 253.057 kb on + strand at 253.057 kb on + strand at 253.137 kb on - strand at 253.137 kb on - strand at 253.226 kb on + strand, within GFF4042 at 253.227 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042 at 253.383 kb on - strand, within GFF4042 at 253.747 kb on - strand at 253.747 kb on - strand at 253.915 kb on + strand, within GFF4043 at 253.918 kb on - strand, within GFF4043 at 254.054 kb on - strand, within GFF4043 at 254.054 kb on - strand, within GFF4043 at 255.012 kb on + strand at 255.013 kb on - strand at 255.013 kb on - strand at 255.013 kb on - strand at 255.117 kb on - strand at 255.117 kb on - strand at 255.117 kb on - strand at 255.258 kb on + strand at 255.510 kb on + strand at 255.510 kb on + strand at 255.511 kb on - strand at 255.544 kb on - strand at 255.636 kb on - strand at 255.722 kb on + strand at 255.723 kb on - strand at 255.727 kb on - strand at 255.747 kb on - strand at 255.747 kb on - strand at 255.846 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 252,981 - +0.5 252,981 - +0.8 252,990 + +3.6 252,990 + -2.2 252,990 + +0.1 252,990 + -1.0 252,991 - -1.2 253,057 + -2.1 253,057 + -2.2 253,137 - +0.9 253,137 - -0.1 253,226 + GFF4042 0.19 -0.3 253,227 - GFF4042 0.19 +0.0 253,383 - GFF4042 0.42 -0.7 253,383 - GFF4042 0.42 -1.5 253,747 - -2.3 253,747 - +0.9 253,915 + GFF4043 0.11 -3.8 253,918 - GFF4043 0.11 -2.4 254,054 - GFF4043 0.21 -0.8 254,054 - GFF4043 0.21 -2.4 255,012 + -0.4 255,013 - +0.6 255,013 - -0.8 255,013 - -2.6 255,117 - +0.6 255,117 - -2.3 255,117 - +1.2 255,258 + +1.9 255,510 + -0.2 255,510 + -1.4 255,511 - -0.8 255,544 - -0.4 255,636 - -2.4 255,722 + +0.7 255,723 - +0.7 255,727 - +1.4 255,747 - +1.3 255,747 - +3.1 255,846 + -3.5
Or see this region's nucleotide sequence