Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3646 and GFF3647 overlap by 4 nucleotides GFF3647 and GFF3648 are separated by 155 nucleotides GFF3648 and GFF3649 are separated by 51 nucleotides GFF3649 and GFF3650 are separated by 155 nucleotides
GFF3646 - Histone acetyltransferase HPA2 and related acetyltransferases, at 152,413 to 153,000
GFF3646
GFF3647 - Cytochrome b, at 152,997 to 153,710
GFF3647
GFF3648 - putative c'cytochrome, at 153,866 to 154,312
GFF3648
GFF3649 - C-type cytochrome biogenesis protein ResA (thioredoxin), at 154,364 to 154,861
GFF3649
GFF3650 - FIG00932140: hypothetical protein, at 155,017 to 155,502
GFF3650
Position (kb) 153
154
155 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 152.889 kb on - strand, within GFF3646 at 152.889 kb on - strand, within GFF3646 at 152.889 kb on - strand, within GFF3646 at 152.889 kb on - strand, within GFF3646 at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.022 kb on + strand at 153.022 kb on + strand at 153.023 kb on - strand at 153.023 kb on - strand at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.120 kb on + strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.121 kb on - strand, within GFF3647 at 153.178 kb on + strand, within GFF3647 at 153.178 kb on + strand, within GFF3647 at 153.178 kb on + strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.179 kb on - strand, within GFF3647 at 153.207 kb on + strand, within GFF3647 at 153.207 kb on + strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.208 kb on - strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.436 kb on + strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.437 kb on - strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.460 kb on + strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.461 kb on - strand, within GFF3647 at 153.541 kb on + strand, within GFF3647 at 153.541 kb on + strand, within GFF3647 at 153.541 kb on + strand, within GFF3647 at 153.542 kb on - strand, within GFF3647 at 153.753 kb on + strand at 153.753 kb on + strand at 153.753 kb on + strand at 153.754 kb on - strand at 153.754 kb on - strand at 153.754 kb on - strand at 153.754 kb on - strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.791 kb on + strand at 153.792 kb on - strand at 153.792 kb on - strand at 153.792 kb on - strand at 153.792 kb on - strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.815 kb on + strand at 153.816 kb on - strand at 153.816 kb on - strand at 153.816 kb on - strand at 153.816 kb on - strand at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.962 kb on + strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 153.963 kb on - strand, within GFF3648 at 154.037 kb on + strand, within GFF3648 at 154.038 kb on - strand, within GFF3648 at 154.038 kb on - strand, within GFF3648 at 154.310 kb on + strand at 154.310 kb on + strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.311 kb on - strand at 154.428 kb on + strand, within GFF3649 at 154.428 kb on + strand, within GFF3649 at 154.429 kb on - strand, within GFF3649 at 154.429 kb on - strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.464 kb on + strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.465 kb on - strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.572 kb on + strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.573 kb on - strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.587 kb on + strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.588 kb on - strand, within GFF3649 at 154.614 kb on + strand, within GFF3649 at 154.614 kb on + strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.615 kb on - strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.629 kb on + strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.630 kb on - strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.638 kb on + strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.639 kb on - strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.800 kb on + strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.801 kb on - strand, within GFF3649 at 154.851 kb on + strand at 154.851 kb on + strand at 154.851 kb on + strand at 154.852 kb on - strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.869 kb on + strand at 154.870 kb on - strand at 154.870 kb on - strand at 154.870 kb on - strand at 154.892 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 152,889 - GFF3646 0.81 -2.0 152,889 - GFF3646 0.81 -1.3 152,889 - GFF3646 0.81 -3.8 152,889 - GFF3646 0.81 -1.6 153,000 + -0.5 153,000 + -1.4 153,000 + -3.2 153,000 + -2.4 153,000 + -1.7 153,000 + +0.5 153,000 + -1.2 153,001 - -0.8 153,001 - +0.1 153,001 - -1.7 153,001 - -2.3 153,001 - +2.8 153,001 - +3.1 153,001 - -1.2 153,001 - -1.8 153,001 - -1.5 153,001 - -0.6 153,001 - +0.0 153,001 - -2.2 153,001 - +1.7 153,022 + -1.2 153,022 + +1.0 153,023 - -0.0 153,023 - -3.1 153,120 + GFF3647 0.17 +1.5 153,120 + GFF3647 0.17 +0.4 153,120 + GFF3647 0.17 -1.2 153,120 + GFF3647 0.17 -2.7 153,120 + GFF3647 0.17 -2.8 153,120 + GFF3647 0.17 -0.6 153,120 + GFF3647 0.17 -0.2 153,121 - GFF3647 0.17 -2.3 153,121 - GFF3647 0.17 -0.9 153,121 - GFF3647 0.17 -0.7 153,121 - GFF3647 0.17 +0.6 153,121 - GFF3647 0.17 -1.0 153,121 - GFF3647 0.17 -0.9 153,121 - GFF3647 0.17 +0.5 153,178 + GFF3647 0.25 +3.4 153,178 + GFF3647 0.25 -2.3 153,178 + GFF3647 0.25 +1.8 153,179 - GFF3647 0.25 +0.0 153,179 - GFF3647 0.25 -1.9 153,179 - GFF3647 0.25 -1.6 153,179 - GFF3647 0.25 -2.2 153,179 - GFF3647 0.25 -1.2 153,207 + GFF3647 0.29 -0.5 153,207 + GFF3647 0.29 -1.3 153,208 - GFF3647 0.30 +1.3 153,208 - GFF3647 0.30 -3.4 153,208 - GFF3647 0.30 -0.7 153,208 - GFF3647 0.30 -1.9 153,208 - GFF3647 0.30 +0.1 153,208 - GFF3647 0.30 -2.7 153,436 + GFF3647 0.61 -0.3 153,436 + GFF3647 0.61 -0.9 153,436 + GFF3647 0.61 -0.2 153,436 + GFF3647 0.61 -2.5 153,437 - GFF3647 0.62 -1.2 153,437 - GFF3647 0.62 -2.0 153,437 - GFF3647 0.62 -1.1 153,437 - GFF3647 0.62 -0.5 153,437 - GFF3647 0.62 -3.2 153,460 + GFF3647 0.65 +3.2 153,460 + GFF3647 0.65 -1.2 153,460 + GFF3647 0.65 +0.1 153,460 + GFF3647 0.65 -0.2 153,460 + GFF3647 0.65 +0.9 153,460 + GFF3647 0.65 +1.7 153,460 + GFF3647 0.65 +0.3 153,460 + GFF3647 0.65 -2.3 153,461 - GFF3647 0.65 -0.2 153,461 - GFF3647 0.65 -0.0 153,461 - GFF3647 0.65 -2.8 153,461 - GFF3647 0.65 -0.3 153,541 + GFF3647 0.76 -0.2 153,541 + GFF3647 0.76 -2.3 153,541 + GFF3647 0.76 +1.1 153,542 - GFF3647 0.76 -1.3 153,753 + -1.7 153,753 + -0.4 153,753 + -1.4 153,754 - +0.9 153,754 - -1.9 153,754 - -0.7 153,754 - -1.7 153,791 + -1.2 153,791 + -0.5 153,791 + +1.0 153,791 + -0.0 153,791 + -0.9 153,791 + -3.3 153,791 + -2.8 153,792 - +0.3 153,792 - -1.7 153,792 - +0.2 153,792 - -0.9 153,815 + -0.4 153,815 + +1.0 153,815 + +0.7 153,815 + -2.4 153,815 + +0.8 153,815 + -2.1 153,815 + -0.6 153,815 + -2.2 153,815 + -4.0 153,816 - -1.4 153,816 - -1.8 153,816 - -0.9 153,816 - -1.2 153,962 + GFF3648 0.21 +0.1 153,962 + GFF3648 0.21 -0.2 153,962 + GFF3648 0.21 -1.6 153,962 + GFF3648 0.21 +0.2 153,962 + GFF3648 0.21 -0.2 153,963 - GFF3648 0.22 +1.3 153,963 - GFF3648 0.22 +1.9 153,963 - GFF3648 0.22 +0.1 153,963 - GFF3648 0.22 +0.8 153,963 - GFF3648 0.22 +1.6 153,963 - GFF3648 0.22 -1.4 153,963 - GFF3648 0.22 -1.3 154,037 + GFF3648 0.38 -1.3 154,038 - GFF3648 0.38 -1.5 154,038 - GFF3648 0.38 -2.3 154,310 + -1.4 154,310 + +0.1 154,311 - -0.2 154,311 - +1.3 154,311 - -0.2 154,311 - +0.1 154,311 - -0.7 154,428 + GFF3649 0.13 +0.1 154,428 + GFF3649 0.13 -2.3 154,429 - GFF3649 0.13 -0.2 154,429 - GFF3649 0.13 -1.4 154,464 + GFF3649 0.20 +0.6 154,464 + GFF3649 0.20 -0.2 154,464 + GFF3649 0.20 -1.4 154,464 + GFF3649 0.20 +2.1 154,464 + GFF3649 0.20 +0.1 154,464 + GFF3649 0.20 -1.2 154,464 + GFF3649 0.20 +0.1 154,464 + GFF3649 0.20 -0.4 154,464 + GFF3649 0.20 -0.8 154,464 + GFF3649 0.20 +0.1 154,464 + GFF3649 0.20 -2.3 154,464 + GFF3649 0.20 -1.0 154,464 + GFF3649 0.20 -0.4 154,464 + GFF3649 0.20 -0.9 154,464 + GFF3649 0.20 +2.1 154,464 + GFF3649 0.20 +0.6 154,465 - GFF3649 0.20 +4.7 154,465 - GFF3649 0.20 -0.4 154,465 - GFF3649 0.20 -0.4 154,465 - GFF3649 0.20 -0.2 154,465 - GFF3649 0.20 -0.9 154,465 - GFF3649 0.20 +1.1 154,465 - GFF3649 0.20 +0.6 154,465 - GFF3649 0.20 -0.9 154,465 - GFF3649 0.20 -1.2 154,572 + GFF3649 0.42 -0.7 154,572 + GFF3649 0.42 +2.1 154,572 + GFF3649 0.42 -0.7 154,572 + GFF3649 0.42 -1.4 154,573 - GFF3649 0.42 -2.2 154,573 - GFF3649 0.42 +1.1 154,573 - GFF3649 0.42 -0.9 154,573 - GFF3649 0.42 -0.2 154,573 - GFF3649 0.42 -1.2 154,573 - GFF3649 0.42 -0.7 154,573 - GFF3649 0.42 +1.1 154,573 - GFF3649 0.42 -1.0 154,573 - GFF3649 0.42 +0.1 154,573 - GFF3649 0.42 +1.1 154,573 - GFF3649 0.42 +1.1 154,587 + GFF3649 0.45 +1.1 154,587 + GFF3649 0.45 +0.6 154,587 + GFF3649 0.45 +1.7 154,587 + GFF3649 0.45 +2.1 154,587 + GFF3649 0.45 -0.2 154,587 + GFF3649 0.45 -1.2 154,587 + GFF3649 0.45 +1.0 154,587 + GFF3649 0.45 -1.9 154,587 + GFF3649 0.45 +0.1 154,587 + GFF3649 0.45 -0.2 154,587 + GFF3649 0.45 +2.1 154,588 - GFF3649 0.45 +0.6 154,588 - GFF3649 0.45 +0.6 154,588 - GFF3649 0.45 +0.1 154,588 - GFF3649 0.45 -2.2 154,588 - GFF3649 0.45 +0.1 154,588 - GFF3649 0.45 -0.9 154,588 - GFF3649 0.45 +1.0 154,588 - GFF3649 0.45 -0.4 154,588 - GFF3649 0.45 +0.1 154,614 + GFF3649 0.50 +1.1 154,614 + GFF3649 0.50 +0.0 154,615 - GFF3649 0.50 +1.1 154,615 - GFF3649 0.50 -1.9 154,615 - GFF3649 0.50 -1.9 154,629 + GFF3649 0.53 +0.1 154,629 + GFF3649 0.53 -2.2 154,629 + GFF3649 0.53 +1.5 154,629 + GFF3649 0.53 +1.1 154,629 + GFF3649 0.53 -0.4 154,629 + GFF3649 0.53 -0.4 154,629 + GFF3649 0.53 -1.3 154,630 - GFF3649 0.53 -1.2 154,630 - GFF3649 0.53 +1.1 154,630 - GFF3649 0.53 +2.0 154,630 - GFF3649 0.53 +1.1 154,630 - GFF3649 0.53 +2.1 154,630 - GFF3649 0.53 +0.1 154,630 - GFF3649 0.53 -2.0 154,630 - GFF3649 0.53 -1.9 154,630 - GFF3649 0.53 -0.4 154,630 - GFF3649 0.53 -0.2 154,638 + GFF3649 0.55 -1.0 154,638 + GFF3649 0.55 +2.1 154,638 + GFF3649 0.55 -1.8 154,638 + GFF3649 0.55 -0.7 154,638 + GFF3649 0.55 +1.4 154,639 - GFF3649 0.55 -1.4 154,639 - GFF3649 0.55 -1.7 154,639 - GFF3649 0.55 -1.7 154,639 - GFF3649 0.55 -1.4 154,639 - GFF3649 0.55 -1.7 154,800 + GFF3649 0.88 +0.6 154,800 + GFF3649 0.88 +0.6 154,800 + GFF3649 0.88 +0.1 154,800 + GFF3649 0.88 +0.1 154,800 + GFF3649 0.88 +1.1 154,800 + GFF3649 0.88 +2.1 154,800 + GFF3649 0.88 -0.4 154,800 + GFF3649 0.88 +2.1 154,800 + GFF3649 0.88 +0.1 154,800 + GFF3649 0.88 -0.7 154,801 - GFF3649 0.88 +0.1 154,801 - GFF3649 0.88 +0.3 154,801 - GFF3649 0.88 -1.4 154,801 - GFF3649 0.88 -1.6 154,801 - GFF3649 0.88 -1.2 154,801 - GFF3649 0.88 -0.4 154,801 - GFF3649 0.88 -1.3 154,851 + -0.9 154,851 + -1.0 154,851 + +0.1 154,852 - -2.9 154,869 + -1.2 154,869 + +0.4 154,869 + +0.3 154,869 + +0.5 154,869 + -3.8 154,870 - -0.4 154,870 - +2.1 154,870 - +1.8 154,892 + -1.3
Or see this region's nucleotide sequence