Strain Fitness in Variovorax sp. SCN45 around GFF3511

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
16,773	-				-1.1
16,836	-				+0.5
16,860	+				-1.0
16,861	-				-2.1
16,911	-				-1.0
16,911	-				-1.0
17,114	+				+0.9
17,115	-				+0.9
17,139	+				-1.6
17,139	+				-0.4
17,139	+				-3.4
17,139	+				+0.7
17,139	+				+1.0
17,139	+				+0.4
17,140	-				-3.7
17,140	-				-1.7
17,140	-				-0.9
17,140	-				+0.7
17,140	-				-2.2
17,140	-				-3.1
17,231	+				-1.8
17,231	+				-1.2
17,527	+		GFF3511	0.36	+4.1
17,766	+		GFF3511	0.60	+0.1
17,773	+		GFF3511	0.61	-0.2
17,775	-		GFF3511	0.61	-2.1
17,843	+		GFF3511	0.68	-2.0
17,965	+		GFF3511	0.80	+0.7
17,965	+		GFF3511	0.80	-2.6
17,965	+		GFF3511	0.80	+0.5
17,966	-		GFF3511	0.80	-2.3
17,966	-		GFF3511	0.80	-1.5
18,140	+				+2.9
18,140	+				-0.0
18,149	+				-1.5
18,159	-				-1.2
18,484	-		GFF3512	0.73	-2.9
18,484	-		GFF3512	0.73	+0.5
18,484	-		GFF3512	0.73	+1.3
18,484	-		GFF3512	0.73	+0.2
18,484	-		GFF3512	0.73	-2.2
18,504	+		GFF3512	0.79	-0.2
18,504	+		GFF3512	0.79	+0.1
18,573	+				-2.5
18,574	-				+1.4
18,849	+		GFF3514	0.21	-0.7
18,850	-		GFF3514	0.22	-1.2
18,888	+		GFF3514	0.61	-2.6
18,888	+		GFF3514	0.61	+0.4
18,889	-		GFF3514	0.62	-0.7
18,889	-		GFF3514	0.62	+0.9
19,066	+				-0.2
19,066	+				-2.0
19,115	-		GFF3515	0.10	-1.3
19,115	-		GFF3515	0.10	-1.1