Strain Fitness in Variovorax sp. SCN45 around GFF35

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF33 and GFF34 are separated by 87 nucleotidesGFF34 and GFF35 overlap by 4 nucleotidesGFF35 and GFF36 are separated by 21 nucleotides GFF33 - Type IV pilus biogenesis protein PilZ, at 37,142 to 37,528 GFF33 GFF34 - Uncharacterized metal-dependent hydrolase YcfH, at 37,616 to 38,422 GFF34 GFF35 - FOG: Ankyrin repeat, at 38,419 to 39,099 GFF35 GFF36 - Similar to Agmatine deiminase, at 39,121 to 40,245 GFF36 Position (kb) 38 39 40Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 37.561 kb on + strandat 37.561 kb on + strandat 37.561 kb on + strandat 37.562 kb on - strandat 37.562 kb on - strandat 37.772 kb on + strand, within GFF34at 37.772 kb on + strand, within GFF34at 37.772 kb on + strand, within GFF34at 37.772 kb on + strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.773 kb on - strand, within GFF34at 37.774 kb on - strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.901 kb on + strand, within GFF34at 37.902 kb on - strand, within GFF34at 37.902 kb on - strand, within GFF34at 37.902 kb on - strand, within GFF34at 37.904 kb on + strand, within GFF34at 37.904 kb on + strand, within GFF34at 37.904 kb on + strand, within GFF34at 37.905 kb on - strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.159 kb on + strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.160 kb on - strand, within GFF34at 38.264 kb on + strand, within GFF34at 38.264 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.309 kb on + strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.310 kb on - strand, within GFF34at 38.318 kb on + strand, within GFF34at 38.318 kb on + strand, within GFF34at 38.318 kb on + strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.319 kb on - strand, within GFF34at 38.446 kb on + strandat 38.797 kb on + strand, within GFF35at 38.797 kb on + strand, within GFF35at 38.797 kb on + strand, within GFF35at 38.797 kb on + strand, within GFF35at 38.797 kb on + strand, within GFF35at 38.798 kb on - strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.908 kb on + strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 38.909 kb on - strand, within GFF35at 39.097 kb on + strandat 39.097 kb on + strandat 39.117 kb on + strandat 39.117 kb on + strandat 39.117 kb on + strandat 39.118 kb on - strandat 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.296 kb on + strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.297 kb on - strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.308 kb on + strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.309 kb on - strand, within GFF36at 39.449 kb on + strand, within GFF36at 39.449 kb on + strand, within GFF36at 39.449 kb on + strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.450 kb on - strand, within GFF36at 39.509 kb on + strand, within GFF36at 39.509 kb on + strand, within GFF36at 39.755 kb on + strand, within GFF36at 39.755 kb on + strand, within GFF36at 39.756 kb on - strand, within GFF36at 39.756 kb on - strand, within GFF36

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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37,561 + -0.8
37,561 + +1.2
37,561 + -1.0
37,562 - +0.9
37,562 - +1.1
37,772 + GFF34 0.19 +1.4
37,772 + GFF34 0.19 -3.0
37,772 + GFF34 0.19 -2.0
37,772 + GFF34 0.19 -0.1
37,773 - GFF34 0.19 +0.5
37,773 - GFF34 0.19 -1.2
37,773 - GFF34 0.19 +0.9
37,773 - GFF34 0.19 -0.9
37,773 - GFF34 0.19 -2.6
37,773 - GFF34 0.19 +1.0
37,774 - GFF34 0.20 -2.5
37,901 + GFF34 0.35 +1.0
37,901 + GFF34 0.35 -0.2
37,901 + GFF34 0.35 +0.2
37,901 + GFF34 0.35 +3.0
37,901 + GFF34 0.35 +0.1
37,901 + GFF34 0.35 -0.2
37,902 - GFF34 0.35 +1.9
37,902 - GFF34 0.35 -4.4
37,902 - GFF34 0.35 -3.8
37,904 + GFF34 0.36 +0.0
37,904 + GFF34 0.36 -2.0
37,904 + GFF34 0.36 -2.0
37,905 - GFF34 0.36 -2.6
38,159 + GFF34 0.67 -2.4
38,159 + GFF34 0.67 -0.2
38,159 + GFF34 0.67 -0.8
38,159 + GFF34 0.67 -1.4
38,159 + GFF34 0.67 -1.2
38,159 + GFF34 0.67 +1.7
38,159 + GFF34 0.67 +0.0
38,160 - GFF34 0.67 -0.6
38,160 - GFF34 0.67 -3.3
38,160 - GFF34 0.67 -2.4
38,160 - GFF34 0.67 +0.2
38,160 - GFF34 0.67 -0.6
38,160 - GFF34 0.67 -0.2
38,264 + GFF34 0.80 +0.8
38,264 + GFF34 0.80 +1.2
38,309 + GFF34 0.86 -1.6
38,309 + GFF34 0.86 -4.0
38,309 + GFF34 0.86 -2.0
38,309 + GFF34 0.86 +0.6
38,310 - GFF34 0.86 -1.2
38,310 - GFF34 0.86 +0.1
38,310 - GFF34 0.86 -2.4
38,310 - GFF34 0.86 -3.2
38,310 - GFF34 0.86 -0.4
38,310 - GFF34 0.86 -2.2
38,310 - GFF34 0.86 -0.4
38,310 - GFF34 0.86 +1.0
38,318 + GFF34 0.87 -1.4
38,318 + GFF34 0.87 -0.4
38,318 + GFF34 0.87 +1.5
38,319 - GFF34 0.87 -2.9
38,319 - GFF34 0.87 -1.0
38,319 - GFF34 0.87 -2.2
38,319 - GFF34 0.87 -2.2
38,319 - GFF34 0.87 -2.5
38,446 + -1.4
38,797 + GFF35 0.56 -3.7
38,797 + GFF35 0.56 +1.4
38,797 + GFF35 0.56 +1.6
38,797 + GFF35 0.56 -1.3
38,797 + GFF35 0.56 +0.3
38,798 - GFF35 0.56 +0.9
38,908 + GFF35 0.72 -0.5
38,908 + GFF35 0.72 -0.3
38,908 + GFF35 0.72 -1.4
38,908 + GFF35 0.72 +0.8
38,908 + GFF35 0.72 +1.0
38,908 + GFF35 0.72 +0.3
38,908 + GFF35 0.72 -1.4
38,908 + GFF35 0.72 -0.1
38,908 + GFF35 0.72 +2.6
38,908 + GFF35 0.72 -0.0
38,908 + GFF35 0.72 -0.3
38,908 + GFF35 0.72 -0.3
38,908 + GFF35 0.72 -1.9
38,908 + GFF35 0.72 +1.4
38,908 + GFF35 0.72 -1.6
38,908 + GFF35 0.72 +0.0
38,908 + GFF35 0.72 -1.4
38,908 + GFF35 0.72 -0.9
38,908 + GFF35 0.72 -1.4
38,908 + GFF35 0.72 +1.9
38,908 + GFF35 0.72 -2.3
38,909 - GFF35 0.72 -1.6
38,909 - GFF35 0.72 -1.2
38,909 - GFF35 0.72 +2.5
38,909 - GFF35 0.72 +0.4
38,909 - GFF35 0.72 -2.4
38,909 - GFF35 0.72 -1.0
38,909 - GFF35 0.72 +0.2
38,909 - GFF35 0.72 +0.9
38,909 - GFF35 0.72 +0.4
38,909 - GFF35 0.72 +0.2
38,909 - GFF35 0.72 +1.7
38,909 - GFF35 0.72 -2.3
38,909 - GFF35 0.72 -3.1
38,909 - GFF35 0.72 -3.3
38,909 - GFF35 0.72 -2.0
38,909 - GFF35 0.72 +0.8
38,909 - GFF35 0.72 +0.5
38,909 - GFF35 0.72 +0.3
38,909 - GFF35 0.72 -0.4
38,909 - GFF35 0.72 -3.1
38,909 - GFF35 0.72 +0.5
38,909 - GFF35 0.72 -1.0
38,909 - GFF35 0.72 -0.9
39,097 + -2.8
39,097 + -3.2
39,117 + +0.0
39,117 + +0.8
39,117 + -2.0
39,118 - -1.4
39,296 + GFF36 0.16 +0.4
39,296 + GFF36 0.16 +0.5
39,296 + GFF36 0.16 +0.2
39,296 + GFF36 0.16 -0.6
39,296 + GFF36 0.16 -3.5
39,296 + GFF36 0.16 -1.7
39,296 + GFF36 0.16 -1.2
39,296 + GFF36 0.16 -1.5
39,296 + GFF36 0.16 -0.6
39,296 + GFF36 0.16 +2.0
39,297 - GFF36 0.16 +1.1
39,297 - GFF36 0.16 -2.9
39,297 - GFF36 0.16 +0.4
39,297 - GFF36 0.16 -1.8
39,297 - GFF36 0.16 -0.8
39,297 - GFF36 0.16 +1.4
39,297 - GFF36 0.16 +0.6
39,297 - GFF36 0.16 -1.2
39,297 - GFF36 0.16 +2.2
39,297 - GFF36 0.16 -1.4
39,297 - GFF36 0.16 -3.2
39,297 - GFF36 0.16 +2.5
39,308 + GFF36 0.17 +1.4
39,308 + GFF36 0.17 +0.7
39,308 + GFF36 0.17 +1.8
39,308 + GFF36 0.17 -3.0
39,308 + GFF36 0.17 +1.4
39,308 + GFF36 0.17 +0.9
39,308 + GFF36 0.17 +0.1
39,308 + GFF36 0.17 -0.0
39,309 - GFF36 0.17 +2.8
39,309 - GFF36 0.17 -3.3
39,309 - GFF36 0.17 -0.1
39,309 - GFF36 0.17 +1.4
39,309 - GFF36 0.17 -1.7
39,309 - GFF36 0.17 +1.8
39,309 - GFF36 0.17 +0.4
39,449 + GFF36 0.29 +1.4
39,449 + GFF36 0.29 -2.5
39,449 + GFF36 0.29 +0.2
39,450 - GFF36 0.29 +0.5
39,450 - GFF36 0.29 +1.4
39,450 - GFF36 0.29 -0.8
39,450 - GFF36 0.29 +0.7
39,509 + GFF36 0.34 +1.2
39,509 + GFF36 0.34 -1.4
39,755 + GFF36 0.56 +1.7
39,755 + GFF36 0.56 -0.4
39,756 - GFF36 0.56 +0.4
39,756 - GFF36 0.56 -0.5

Or see this region's nucleotide sequence