Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3475 and GFF3476 are separated by 85 nucleotides GFF3476 and GFF3477 are separated by 95 nucleotides
GFF3475 - Gate supefamily SpmA/SpmB domains protein, at 295,848 to 297,077
GFF3475
GFF3476 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 297,163 to 298,746
GFF3476
GFF3477 - Phosphoprotein phosphatase, at 298,842 to 300,410
GFF3477
Position (kb) 297
298
299 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 296.236 kb on + strand, within GFF3475 at 296.237 kb on - strand, within GFF3475 at 296.296 kb on + strand, within GFF3475 at 296.296 kb on + strand, within GFF3475 at 296.296 kb on + strand, within GFF3475 at 296.297 kb on - strand, within GFF3475 at 296.297 kb on - strand, within GFF3475 at 296.297 kb on - strand, within GFF3475 at 296.297 kb on - strand, within GFF3475 at 296.297 kb on - strand, within GFF3475 at 296.297 kb on - strand, within GFF3475 at 296.297 kb on - strand, within GFF3475 at 296.458 kb on + strand, within GFF3475 at 296.458 kb on + strand, within GFF3475 at 296.459 kb on - strand, within GFF3475 at 296.459 kb on - strand, within GFF3475 at 296.459 kb on - strand, within GFF3475 at 296.599 kb on + strand, within GFF3475 at 296.599 kb on + strand, within GFF3475 at 296.599 kb on + strand, within GFF3475 at 296.599 kb on + strand, within GFF3475 at 296.599 kb on + strand, within GFF3475 at 297.118 kb on + strand at 297.118 kb on + strand at 297.119 kb on - strand at 297.119 kb on - strand at 297.127 kb on - strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.150 kb on + strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.151 kb on - strand at 297.445 kb on + strand, within GFF3476 at 297.445 kb on + strand, within GFF3476 at 297.445 kb on + strand, within GFF3476 at 297.445 kb on + strand, within GFF3476 at 297.445 kb on + strand, within GFF3476 at 297.446 kb on - strand, within GFF3476 at 297.446 kb on - strand, within GFF3476 at 297.448 kb on + strand, within GFF3476 at 297.448 kb on + strand, within GFF3476 at 297.448 kb on + strand, within GFF3476 at 297.448 kb on + strand, within GFF3476 at 297.448 kb on + strand, within GFF3476 at 297.449 kb on - strand, within GFF3476 at 297.449 kb on - strand, within GFF3476 at 297.449 kb on - strand, within GFF3476 at 297.547 kb on + strand, within GFF3476 at 297.547 kb on + strand, within GFF3476 at 297.547 kb on + strand, within GFF3476 at 297.547 kb on + strand, within GFF3476 at 297.547 kb on + strand, within GFF3476 at 297.547 kb on + strand, within GFF3476 at 297.548 kb on - strand, within GFF3476 at 298.045 kb on + strand, within GFF3476 at 298.046 kb on - strand, within GFF3476 at 298.112 kb on - strand, within GFF3476 at 298.112 kb on - strand, within GFF3476 at 298.186 kb on + strand, within GFF3476 at 298.186 kb on + strand, within GFF3476 at 298.187 kb on - strand, within GFF3476 at 298.307 kb on - strand, within GFF3476 at 298.351 kb on + strand, within GFF3476 at 298.549 kb on + strand, within GFF3476 at 298.550 kb on - strand, within GFF3476 at 298.550 kb on - strand, within GFF3476 at 298.636 kb on + strand at 298.636 kb on + strand at 298.637 kb on - strand at 298.637 kb on - strand at 298.637 kb on - strand at 298.744 kb on + strand at 298.770 kb on + strand at 298.770 kb on + strand at 298.770 kb on + strand at 298.771 kb on - strand at 298.771 kb on - strand at 298.773 kb on + strand at 298.773 kb on + strand at 298.773 kb on + strand at 298.774 kb on - strand at 298.774 kb on - strand at 298.795 kb on + strand at 298.819 kb on + strand at 299.118 kb on + strand, within GFF3477 at 299.118 kb on + strand, within GFF3477 at 299.119 kb on - strand, within GFF3477 at 299.119 kb on - strand, within GFF3477 at 299.524 kb on - strand, within GFF3477 at 299.529 kb on + strand, within GFF3477 at 299.731 kb on - strand, within GFF3477 at 299.731 kb on - strand, within GFF3477 at 299.731 kb on - strand, within GFF3477
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 296,236 + GFF3475 0.32 +0.8 296,237 - GFF3475 0.32 -1.7 296,296 + GFF3475 0.36 -0.2 296,296 + GFF3475 0.36 +0.4 296,296 + GFF3475 0.36 +0.9 296,297 - GFF3475 0.37 +0.6 296,297 - GFF3475 0.37 -0.8 296,297 - GFF3475 0.37 -3.1 296,297 - GFF3475 0.37 +0.2 296,297 - GFF3475 0.37 +0.8 296,297 - GFF3475 0.37 -1.2 296,297 - GFF3475 0.37 -2.7 296,458 + GFF3475 0.50 +1.7 296,458 + GFF3475 0.50 +0.2 296,459 - GFF3475 0.50 -2.9 296,459 - GFF3475 0.50 +0.0 296,459 - GFF3475 0.50 +2.4 296,599 + GFF3475 0.61 -0.8 296,599 + GFF3475 0.61 -1.9 296,599 + GFF3475 0.61 +0.8 296,599 + GFF3475 0.61 -1.2 296,599 + GFF3475 0.61 +0.1 297,118 + -1.2 297,118 + -0.8 297,119 - +0.8 297,119 - -0.1 297,127 - +0.1 297,150 + -1.6 297,150 + +1.6 297,150 + -0.2 297,150 + -2.4 297,151 - -0.6 297,151 - +1.6 297,151 - +0.5 297,151 - -0.3 297,151 - +0.7 297,151 - -0.0 297,151 - -0.1 297,445 + GFF3476 0.18 -1.2 297,445 + GFF3476 0.18 -1.0 297,445 + GFF3476 0.18 -0.9 297,445 + GFF3476 0.18 +0.9 297,445 + GFF3476 0.18 +0.7 297,446 - GFF3476 0.18 +1.5 297,446 - GFF3476 0.18 -1.5 297,448 + GFF3476 0.18 +0.6 297,448 + GFF3476 0.18 -0.6 297,448 + GFF3476 0.18 +0.2 297,448 + GFF3476 0.18 +1.2 297,448 + GFF3476 0.18 +0.9 297,449 - GFF3476 0.18 +2.2 297,449 - GFF3476 0.18 -2.8 297,449 - GFF3476 0.18 -0.6 297,547 + GFF3476 0.24 -0.1 297,547 + GFF3476 0.24 +0.0 297,547 + GFF3476 0.24 -1.2 297,547 + GFF3476 0.24 -0.2 297,547 + GFF3476 0.24 +0.1 297,547 + GFF3476 0.24 +0.1 297,548 - GFF3476 0.24 -0.3 298,045 + GFF3476 0.56 +1.7 298,046 - GFF3476 0.56 +0.5 298,112 - GFF3476 0.60 +1.4 298,112 - GFF3476 0.60 -1.2 298,186 + GFF3476 0.65 -0.1 298,186 + GFF3476 0.65 +0.5 298,187 - GFF3476 0.65 +0.2 298,307 - GFF3476 0.72 -1.8 298,351 + GFF3476 0.75 +3.1 298,549 + GFF3476 0.88 -1.0 298,550 - GFF3476 0.88 -0.2 298,550 - GFF3476 0.88 -0.6 298,636 + -0.8 298,636 + -0.5 298,637 - -0.3 298,637 - +1.2 298,637 - -0.2 298,744 + -0.5 298,770 + +0.4 298,770 + -0.2 298,770 + -1.5 298,771 - -0.0 298,771 - +1.8 298,773 + -0.8 298,773 + -1.7 298,773 + +0.5 298,774 - +0.5 298,774 - +0.6 298,795 + -2.6 298,819 + +0.1 299,118 + GFF3477 0.18 -3.4 299,118 + GFF3477 0.18 +1.2 299,119 - GFF3477 0.18 -0.1 299,119 - GFF3477 0.18 -0.3 299,524 - GFF3477 0.43 -0.9 299,529 + GFF3477 0.44 +0.8 299,731 - GFF3477 0.57 -1.6 299,731 - GFF3477 0.57 +0.5 299,731 - GFF3477 0.57 -0.7
Or see this region's nucleotide sequence