Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3225 and GFF3226 are separated by 90 nucleotides GFF3226 and GFF3227 are separated by 17 nucleotides GFF3227 and GFF3228 are separated by 41 nucleotides GFF3228 and GFF3229 are separated by 63 nucleotides GFF3229 and GFF3230 are separated by 100 nucleotides GFF3230 and GFF3231 overlap by 4 nucleotides
GFF3225 - hypothetical protein, at 45,627 to 47,885
GFF3225
GFF3226 - no description, at 47,976 to 48,326
GFF3226
GFF3227 - no description, at 48,344 to 48,694
GFF3227
GFF3228 - hypothetical protein, at 48,736 to 49,665
GFF3228
GFF3229 - hypothetical protein, at 49,729 to 50,208
GFF3229
GFF3230 - no description, at 50,309 to 50,578
GFF3230
GFF3231 - hypothetical protein, at 50,575 to 51,186
GFF3231
Position (kb) 48
49
50 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 47.826 kb on + strand at 47.826 kb on + strand at 47.891 kb on + strand at 47.892 kb on - strand at 48.192 kb on + strand, within GFF3226 at 48.192 kb on + strand, within GFF3226 at 48.193 kb on - strand, within GFF3226 at 48.381 kb on + strand, within GFF3227 at 48.381 kb on + strand, within GFF3227 at 48.387 kb on + strand, within GFF3227 at 48.388 kb on - strand, within GFF3227 at 49.154 kb on + strand, within GFF3228 at 49.280 kb on + strand, within GFF3228 at 49.469 kb on + strand, within GFF3228 at 49.505 kb on + strand, within GFF3228 at 49.506 kb on - strand, within GFF3228 at 49.506 kb on - strand, within GFF3228 at 50.081 kb on + strand, within GFF3229 at 50.081 kb on + strand, within GFF3229 at 50.082 kb on - strand, within GFF3229 at 50.082 kb on - strand, within GFF3229 at 50.082 kb on - strand, within GFF3229 at 50.242 kb on + strand at 50.242 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 47,826 + +0.6 47,826 + -3.7 47,891 + -0.4 47,892 - +0.8 48,192 + GFF3226 0.62 -0.5 48,192 + GFF3226 0.62 +0.3 48,193 - GFF3226 0.62 +4.5 48,381 + GFF3227 0.11 +0.9 48,381 + GFF3227 0.11 -3.5 48,387 + GFF3227 0.12 +0.7 48,388 - GFF3227 0.13 +1.5 49,154 + GFF3228 0.45 +1.3 49,280 + GFF3228 0.58 -2.8 49,469 + GFF3228 0.79 -1.9 49,505 + GFF3228 0.83 +1.0 49,506 - GFF3228 0.83 +0.9 49,506 - GFF3228 0.83 -2.2 50,081 + GFF3229 0.73 -1.9 50,081 + GFF3229 0.73 -2.3 50,082 - GFF3229 0.74 -2.1 50,082 - GFF3229 0.74 -1.4 50,082 - GFF3229 0.74 -0.1 50,242 + -3.2 50,242 + +0.2
Or see this region's nucleotide sequence