Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3179 and GFF3180 are separated by 69 nucleotides GFF3180 and GFF3181 are separated by 8 nucleotides GFF3181 and GFF3182 overlap by 4 nucleotides
GFF3179 - hypothetical protein, at 621,586 to 622,590
GFF3179
GFF3180 - FIG00348182: hypothetical protein, at 622,660 to 623,316
GFF3180
GFF3181 - FIG005069: Hypothetical protein, at 623,325 to 624,128
GFF3181
GFF3182 - Cyclopropane-fatty-acyl-phospholipid synthase-like protein, clusters with FIG005069, at 624,125 to 625,171
GFF3182
Position (kb) 623
624
625 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 622.338 kb on + strand, within GFF3179 at 622.338 kb on + strand, within GFF3179 at 622.447 kb on + strand, within GFF3179 at 622.447 kb on + strand, within GFF3179 at 622.530 kb on - strand at 622.530 kb on - strand at 622.596 kb on + strand at 622.596 kb on + strand at 622.596 kb on + strand at 622.596 kb on + strand at 622.596 kb on + strand at 622.597 kb on - strand at 622.597 kb on - strand at 622.597 kb on - strand at 622.597 kb on - strand at 622.597 kb on - strand at 622.597 kb on - strand at 622.662 kb on - strand at 622.662 kb on - strand at 622.736 kb on + strand, within GFF3180 at 623.035 kb on - strand, within GFF3180 at 623.090 kb on + strand, within GFF3180 at 623.091 kb on - strand, within GFF3180 at 623.091 kb on - strand, within GFF3180 at 623.091 kb on - strand, within GFF3180 at 623.091 kb on - strand, within GFF3180 at 623.389 kb on + strand at 623.390 kb on - strand at 623.390 kb on - strand at 623.566 kb on + strand, within GFF3181 at 623.566 kb on + strand, within GFF3181 at 623.566 kb on + strand, within GFF3181 at 623.584 kb on + strand, within GFF3181 at 623.585 kb on - strand, within GFF3181 at 623.803 kb on + strand, within GFF3181 at 623.803 kb on + strand, within GFF3181 at 623.804 kb on - strand, within GFF3181 at 623.804 kb on - strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.896 kb on + strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.897 kb on - strand, within GFF3181 at 623.981 kb on - strand, within GFF3181 at 623.981 kb on - strand, within GFF3181 at 623.981 kb on - strand, within GFF3181 at 624.004 kb on + strand, within GFF3181 at 624.004 kb on + strand, within GFF3181 at 624.005 kb on - strand, within GFF3181 at 624.255 kb on + strand, within GFF3182 at 624.255 kb on + strand, within GFF3182 at 624.333 kb on + strand, within GFF3182 at 624.432 kb on + strand, within GFF3182 at 624.433 kb on - strand, within GFF3182 at 624.433 kb on - strand, within GFF3182 at 624.433 kb on - strand, within GFF3182 at 624.433 kb on - strand, within GFF3182 at 624.694 kb on - strand, within GFF3182 at 624.904 kb on - strand, within GFF3182 at 624.954 kb on + strand, within GFF3182 at 624.954 kb on + strand, within GFF3182 at 624.955 kb on - strand, within GFF3182
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 622,338 + GFF3179 0.75 -0.3 622,338 + GFF3179 0.75 +0.4 622,447 + GFF3179 0.86 -0.2 622,447 + GFF3179 0.86 -4.0 622,530 - +2.9 622,530 - -1.5 622,596 + +0.8 622,596 + -1.6 622,596 + +0.8 622,596 + -0.7 622,596 + +0.1 622,597 - -2.6 622,597 - -0.9 622,597 - -3.2 622,597 - -1.4 622,597 - +2.5 622,597 - -1.5 622,662 - -1.6 622,662 - +0.4 622,736 + GFF3180 0.12 -1.7 623,035 - GFF3180 0.57 -0.3 623,090 + GFF3180 0.65 +1.4 623,091 - GFF3180 0.66 -1.9 623,091 - GFF3180 0.66 +0.8 623,091 - GFF3180 0.66 +2.3 623,091 - GFF3180 0.66 -3.1 623,389 + +0.2 623,390 - +0.2 623,390 - +0.6 623,566 + GFF3181 0.30 -0.6 623,566 + GFF3181 0.30 -2.9 623,566 + GFF3181 0.30 -0.5 623,584 + GFF3181 0.32 +1.0 623,585 - GFF3181 0.32 -1.5 623,803 + GFF3181 0.59 -0.8 623,803 + GFF3181 0.59 -1.5 623,804 - GFF3181 0.60 +0.1 623,804 - GFF3181 0.60 +0.6 623,896 + GFF3181 0.71 -1.3 623,896 + GFF3181 0.71 -1.9 623,896 + GFF3181 0.71 +0.5 623,896 + GFF3181 0.71 -0.5 623,896 + GFF3181 0.71 -1.4 623,896 + GFF3181 0.71 -2.7 623,896 + GFF3181 0.71 +1.0 623,896 + GFF3181 0.71 -0.9 623,897 - GFF3181 0.71 +1.7 623,897 - GFF3181 0.71 -2.0 623,897 - GFF3181 0.71 -1.8 623,897 - GFF3181 0.71 -1.5 623,897 - GFF3181 0.71 +1.5 623,897 - GFF3181 0.71 -0.6 623,897 - GFF3181 0.71 +1.9 623,897 - GFF3181 0.71 -3.0 623,897 - GFF3181 0.71 -0.9 623,981 - GFF3181 0.82 -2.2 623,981 - GFF3181 0.82 +2.7 623,981 - GFF3181 0.82 -0.0 624,004 + GFF3181 0.84 -0.6 624,004 + GFF3181 0.84 -1.1 624,005 - GFF3181 0.85 -0.3 624,255 + GFF3182 0.12 -0.9 624,255 + GFF3182 0.12 +3.7 624,333 + GFF3182 0.20 +0.3 624,432 + GFF3182 0.29 -1.3 624,433 - GFF3182 0.29 -1.1 624,433 - GFF3182 0.29 -0.1 624,433 - GFF3182 0.29 -1.6 624,433 - GFF3182 0.29 -2.7 624,694 - GFF3182 0.54 -2.4 624,904 - GFF3182 0.74 +1.1 624,954 + GFF3182 0.79 -1.4 624,954 + GFF3182 0.79 -0.2 624,955 - GFF3182 0.79 +0.8
Or see this region's nucleotide sequence