Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2948 and GFF2949 are separated by 145 nucleotides GFF2949 and GFF2950 are separated by 7 nucleotides GFF2950 and GFF2951 overlap by 4 nucleotides GFF2951 and GFF2952 overlap by 32 nucleotides
GFF2948 - salicylate esterase, at 372,419 to 373,147
GFF2948
GFF2949 - no description, at 373,293 to 373,619
GFF2949
GFF2950 - Arsenite/antimonite:H+ antiporter ArsB, at 373,627 to 374,919
GFF2950
GFF2951 - Arsenate reductase (EC 1.20.4.1) glutaredoxin-coupled, glutaredoxin-like family, at 374,916 to 375,350
GFF2951
GFF2952 - Arsenic resistance protein ArsH, at 375,319 to 376,053
GFF2952
Position (kb) 373
374
375 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 372.679 kb on - strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.795 kb on + strand, within GFF2948 at 372.796 kb on - strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.855 kb on + strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.856 kb on - strand, within GFF2948 at 372.918 kb on + strand, within GFF2948 at 372.919 kb on - strand, within GFF2948 at 372.919 kb on - strand, within GFF2948 at 372.966 kb on + strand, within GFF2948 at 372.966 kb on + strand, within GFF2948 at 372.967 kb on - strand, within GFF2948 at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.134 kb on + strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.135 kb on - strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.138 kb on + strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.139 kb on - strand at 373.184 kb on + strand at 373.184 kb on + strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.185 kb on - strand at 373.207 kb on + strand at 373.207 kb on + strand at 373.509 kb on + strand, within GFF2949 at 373.509 kb on + strand, within GFF2949 at 373.510 kb on - strand, within GFF2949 at 373.762 kb on - strand, within GFF2950 at 374.149 kb on + strand, within GFF2950 at 374.149 kb on + strand, within GFF2950 at 374.149 kb on + strand, within GFF2950 at 374.215 kb on + strand, within GFF2950 at 374.215 kb on + strand, within GFF2950 at 374.216 kb on - strand, within GFF2950 at 374.242 kb on + strand, within GFF2950 at 374.243 kb on - strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.494 kb on + strand, within GFF2950 at 374.495 kb on - strand, within GFF2950 at 374.495 kb on - strand, within GFF2950 at 374.495 kb on - strand, within GFF2950 at 374.495 kb on - strand, within GFF2950 at 374.495 kb on - strand, within GFF2950 at 374.495 kb on - strand, within GFF2950 at 374.506 kb on + strand, within GFF2950 at 374.506 kb on + strand, within GFF2950 at 374.713 kb on + strand, within GFF2950 at 374.713 kb on + strand, within GFF2950 at 374.713 kb on + strand, within GFF2950 at 374.713 kb on + strand, within GFF2950 at 374.713 kb on + strand, within GFF2950 at 374.713 kb on + strand, within GFF2950 at 374.830 kb on + strand at 374.830 kb on + strand at 374.831 kb on - strand at 374.831 kb on - strand at 374.937 kb on + strand at 374.937 kb on + strand at 374.937 kb on + strand at 374.938 kb on - strand at 374.938 kb on - strand at 374.938 kb on - strand at 375.018 kb on + strand, within GFF2951 at 375.018 kb on + strand, within GFF2951 at 375.018 kb on + strand, within GFF2951 at 375.114 kb on + strand, within GFF2951 at 375.115 kb on - strand, within GFF2951 at 375.448 kb on + strand, within GFF2952 at 375.448 kb on + strand, within GFF2952 at 375.448 kb on + strand, within GFF2952 at 375.449 kb on - strand, within GFF2952 at 375.472 kb on + strand, within GFF2952 at 375.472 kb on + strand, within GFF2952 at 375.473 kb on - strand, within GFF2952 at 375.473 kb on - strand, within GFF2952 at 375.473 kb on - strand, within GFF2952 at 375.538 kb on + strand, within GFF2952 at 375.538 kb on + strand, within GFF2952 at 375.538 kb on + strand, within GFF2952 at 375.539 kb on - strand, within GFF2952 at 375.539 kb on - strand, within GFF2952 at 375.539 kb on - strand, within GFF2952 at 375.539 kb on - strand, within GFF2952 at 375.539 kb on - strand, within GFF2952 at 375.539 kb on - strand, within GFF2952 at 375.539 kb on - strand, within GFF2952 at 375.905 kb on - strand, within GFF2952 at 375.905 kb on - strand, within GFF2952 at 375.907 kb on + strand, within GFF2952 at 375.907 kb on + strand, within GFF2952 at 375.908 kb on - strand, within GFF2952 at 375.908 kb on - strand, within GFF2952
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 372,679 - GFF2948 0.36 +1.6 372,795 + GFF2948 0.52 -1.3 372,795 + GFF2948 0.52 -0.6 372,795 + GFF2948 0.52 -2.3 372,795 + GFF2948 0.52 -1.6 372,795 + GFF2948 0.52 -0.0 372,795 + GFF2948 0.52 -0.9 372,795 + GFF2948 0.52 -1.4 372,795 + GFF2948 0.52 -1.1 372,796 - GFF2948 0.52 -2.6 372,855 + GFF2948 0.60 -0.0 372,855 + GFF2948 0.60 -2.1 372,855 + GFF2948 0.60 -3.0 372,855 + GFF2948 0.60 -3.2 372,855 + GFF2948 0.60 -1.5 372,855 + GFF2948 0.60 +0.2 372,855 + GFF2948 0.60 +0.5 372,855 + GFF2948 0.60 -1.4 372,856 - GFF2948 0.60 -0.1 372,856 - GFF2948 0.60 -0.2 372,856 - GFF2948 0.60 -2.6 372,918 + GFF2948 0.68 -2.1 372,919 - GFF2948 0.69 -1.4 372,919 - GFF2948 0.69 -0.8 372,966 + GFF2948 0.75 +2.7 372,966 + GFF2948 0.75 -1.8 372,967 - GFF2948 0.75 -0.0 373,134 + +0.0 373,134 + -3.2 373,134 + -0.3 373,134 + +0.8 373,134 + +1.3 373,134 + +0.0 373,134 + -3.5 373,134 + -0.9 373,134 + +0.1 373,134 + +1.1 373,134 + -0.6 373,134 + -0.8 373,134 + +1.2 373,134 + -2.4 373,134 + +0.1 373,134 + +0.6 373,134 + -2.8 373,134 + -0.7 373,134 + -0.3 373,134 + +1.9 373,134 + +0.6 373,134 + +0.8 373,134 + -1.8 373,134 + +0.3 373,134 + -1.1 373,134 + -0.2 373,134 + -0.2 373,134 + -3.9 373,135 - +2.5 373,135 - +1.2 373,135 - +2.1 373,135 - +1.6 373,135 - -1.8 373,135 - -2.7 373,135 - +0.7 373,135 - +0.2 373,135 - -1.7 373,135 - -0.8 373,135 - +0.4 373,135 - +1.6 373,135 - +2.7 373,135 - -0.6 373,135 - +0.3 373,135 - +0.2 373,135 - -2.1 373,135 - +1.1 373,135 - -1.3 373,135 - +0.2 373,135 - -1.4 373,135 - +1.2 373,135 - -0.2 373,135 - -0.3 373,135 - -3.0 373,135 - +0.9 373,135 - +0.7 373,135 - -1.7 373,138 + -1.7 373,138 + +1.9 373,138 + +0.2 373,138 + +1.4 373,138 + -1.4 373,138 + -0.5 373,138 + +0.2 373,138 + -2.5 373,138 + -1.3 373,138 + +0.9 373,138 + -2.0 373,138 + -1.3 373,138 + +0.3 373,138 + +2.3 373,138 + -2.7 373,138 + -1.1 373,138 + +0.6 373,138 + -0.7 373,139 - +0.7 373,139 - +0.2 373,139 - +0.5 373,139 - -1.7 373,139 - +1.5 373,139 - -0.4 373,139 - -1.8 373,139 - +1.7 373,139 - -0.3 373,139 - -1.1 373,139 - -1.3 373,139 - -0.5 373,139 - -0.6 373,139 - +0.7 373,139 - +1.6 373,139 - -0.6 373,139 - -1.4 373,139 - -2.0 373,139 - +0.7 373,139 - -1.4 373,139 - -2.3 373,139 - -2.6 373,139 - -1.1 373,184 + -1.7 373,184 + -1.8 373,185 - -1.1 373,185 - -1.7 373,185 - -1.0 373,185 - +1.0 373,207 + -1.6 373,207 + +1.2 373,509 + GFF2949 0.66 -1.8 373,509 + GFF2949 0.66 -0.3 373,510 - GFF2949 0.66 +1.9 373,762 - GFF2950 0.10 -1.1 374,149 + GFF2950 0.40 +1.6 374,149 + GFF2950 0.40 -0.1 374,149 + GFF2950 0.40 +0.2 374,215 + GFF2950 0.45 -2.2 374,215 + GFF2950 0.45 -3.3 374,216 - GFF2950 0.46 +0.4 374,242 + GFF2950 0.48 -0.8 374,243 - GFF2950 0.48 -3.5 374,494 + GFF2950 0.67 +1.6 374,494 + GFF2950 0.67 -2.2 374,494 + GFF2950 0.67 +1.9 374,494 + GFF2950 0.67 +1.2 374,494 + GFF2950 0.67 -1.3 374,494 + GFF2950 0.67 -1.1 374,494 + GFF2950 0.67 -0.8 374,494 + GFF2950 0.67 -3.1 374,494 + GFF2950 0.67 +1.0 374,494 + GFF2950 0.67 -0.1 374,494 + GFF2950 0.67 -1.3 374,494 + GFF2950 0.67 -1.4 374,495 - GFF2950 0.67 +0.2 374,495 - GFF2950 0.67 -0.5 374,495 - GFF2950 0.67 -0.8 374,495 - GFF2950 0.67 -2.2 374,495 - GFF2950 0.67 -1.4 374,495 - GFF2950 0.67 -2.6 374,506 + GFF2950 0.68 -0.8 374,506 + GFF2950 0.68 -4.2 374,713 + GFF2950 0.84 +0.6 374,713 + GFF2950 0.84 -0.6 374,713 + GFF2950 0.84 -4.1 374,713 + GFF2950 0.84 -1.6 374,713 + GFF2950 0.84 -2.5 374,713 + GFF2950 0.84 +0.6 374,830 + +0.7 374,830 + +2.0 374,831 - +1.5 374,831 - -1.4 374,937 + -3.2 374,937 + -3.3 374,937 + -2.6 374,938 - -1.3 374,938 - +0.6 374,938 - +1.7 375,018 + GFF2951 0.23 +0.6 375,018 + GFF2951 0.23 +0.2 375,018 + GFF2951 0.23 -1.2 375,114 + GFF2951 0.46 -2.8 375,115 - GFF2951 0.46 -1.6 375,448 + GFF2952 0.18 -2.8 375,448 + GFF2952 0.18 -1.1 375,448 + GFF2952 0.18 -0.6 375,449 - GFF2952 0.18 -0.8 375,472 + GFF2952 0.21 -1.8 375,472 + GFF2952 0.21 -2.8 375,473 - GFF2952 0.21 +3.1 375,473 - GFF2952 0.21 +2.0 375,473 - GFF2952 0.21 -1.1 375,538 + GFF2952 0.30 +0.0 375,538 + GFF2952 0.30 +1.7 375,538 + GFF2952 0.30 -1.6 375,539 - GFF2952 0.30 -0.8 375,539 - GFF2952 0.30 +2.6 375,539 - GFF2952 0.30 +0.0 375,539 - GFF2952 0.30 -1.3 375,539 - GFF2952 0.30 +1.4 375,539 - GFF2952 0.30 +0.5 375,539 - GFF2952 0.30 -1.4 375,905 - GFF2952 0.80 -0.3 375,905 - GFF2952 0.80 -1.1 375,907 + GFF2952 0.80 -0.4 375,907 + GFF2952 0.80 -3.6 375,908 - GFF2952 0.80 +0.2 375,908 - GFF2952 0.80 -1.1
Or see this region's nucleotide sequence