Strain Fitness in Variovorax sp. SCN45 around GFF2883

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2882 and GFF2883 are separated by 51 nucleotidesGFF2883 and GFF2884 overlap by 4 nucleotides GFF2882 - BUG/TctC family periplasmic protein, at 308,059 to 309,048 GFF2882 GFF2883 - CaiB/BaiF family protein, at 309,100 to 310,305 GFF2883 GFF2884 - Pyruvate:Oxaloacetate transcarboxylase domain protein, at 310,302 to 311,249 GFF2884 Position (kb) 309 310 311Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 308.100 kb on - strandat 308.123 kb on + strandat 308.123 kb on + strandat 308.294 kb on + strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.295 kb on - strand, within GFF2882at 308.480 kb on + strand, within GFF2882at 308.480 kb on + strand, within GFF2882at 308.480 kb on + strand, within GFF2882at 308.481 kb on - strand, within GFF2882at 308.481 kb on - strand, within GFF2882at 308.481 kb on - strand, within GFF2882at 308.487 kb on + strand, within GFF2882at 308.487 kb on + strand, within GFF2882at 308.487 kb on + strand, within GFF2882at 308.488 kb on - strand, within GFF2882at 308.488 kb on - strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.567 kb on + strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.568 kb on - strand, within GFF2882at 308.573 kb on + strand, within GFF2882at 308.573 kb on + strand, within GFF2882at 309.068 kb on + strandat 309.149 kb on + strandat 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.335 kb on + strand, within GFF2883at 309.587 kb on - strand, within GFF2883at 309.587 kb on - strand, within GFF2883at 309.602 kb on + strand, within GFF2883at 309.602 kb on + strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.603 kb on - strand, within GFF2883at 309.662 kb on + strand, within GFF2883at 309.662 kb on + strand, within GFF2883at 309.663 kb on - strand, within GFF2883at 309.663 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.852 kb on - strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.938 kb on + strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.939 kb on - strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.986 kb on + strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.987 kb on - strand, within GFF2883at 309.989 kb on + strand, within GFF2883at 310.299 kb on + strandat 310.299 kb on + strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.300 kb on - strandat 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.560 kb on + strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.561 kb on - strand, within GFF2884at 310.576 kb on + strand, within GFF2884at 310.576 kb on + strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 310.577 kb on - strand, within GFF2884at 311.038 kb on + strand, within GFF2884at 311.038 kb on + strand, within GFF2884at 311.039 kb on - strand, within GFF2884at 311.273 kb on + strandat 311.274 kb on - strandat 311.287 kb on + strandat 311.287 kb on + strandat 311.287 kb on + strandat 311.288 kb on - strandat 311.288 kb on - strandat 311.288 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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308,100 - +0.8
308,123 + -0.9
308,123 + +1.8
308,294 + GFF2882 0.24 +0.3
308,295 - GFF2882 0.24 -1.9
308,295 - GFF2882 0.24 -3.2
308,295 - GFF2882 0.24 +0.2
308,295 - GFF2882 0.24 -1.8
308,295 - GFF2882 0.24 -0.2
308,480 + GFF2882 0.43 -0.3
308,480 + GFF2882 0.43 -0.7
308,480 + GFF2882 0.43 +0.1
308,481 - GFF2882 0.43 -0.6
308,481 - GFF2882 0.43 +2.7
308,481 - GFF2882 0.43 +0.7
308,487 + GFF2882 0.43 -0.8
308,487 + GFF2882 0.43 -1.6
308,487 + GFF2882 0.43 +0.2
308,488 - GFF2882 0.43 -0.2
308,488 - GFF2882 0.43 -0.4
308,567 + GFF2882 0.51 -0.3
308,567 + GFF2882 0.51 +0.1
308,567 + GFF2882 0.51 +1.5
308,567 + GFF2882 0.51 +2.9
308,567 + GFF2882 0.51 -0.4
308,567 + GFF2882 0.51 -1.4
308,567 + GFF2882 0.51 -1.3
308,568 - GFF2882 0.51 -0.6
308,568 - GFF2882 0.51 -0.4
308,568 - GFF2882 0.51 -3.5
308,568 - GFF2882 0.51 +1.8
308,568 - GFF2882 0.51 -4.0
308,568 - GFF2882 0.51 +1.4
308,568 - GFF2882 0.51 -0.6
308,573 + GFF2882 0.52 -3.3
308,573 + GFF2882 0.52 -2.2
309,068 + -1.1
309,149 + +0.9
309,335 + GFF2883 0.19 -3.1
309,335 + GFF2883 0.19 -0.7
309,335 + GFF2883 0.19 -1.4
309,335 + GFF2883 0.19 +1.1
309,587 - GFF2883 0.40 -1.5
309,587 - GFF2883 0.40 +3.7
309,602 + GFF2883 0.42 +0.4
309,602 + GFF2883 0.42 -0.9
309,603 - GFF2883 0.42 +1.7
309,603 - GFF2883 0.42 -2.1
309,603 - GFF2883 0.42 +0.1
309,603 - GFF2883 0.42 +0.1
309,603 - GFF2883 0.42 -2.6
309,603 - GFF2883 0.42 -1.4
309,662 + GFF2883 0.47 -1.3
309,662 + GFF2883 0.47 -2.0
309,663 - GFF2883 0.47 -1.1
309,663 - GFF2883 0.47 +1.5
309,852 - GFF2883 0.62 +0.3
309,852 - GFF2883 0.62 -1.6
309,852 - GFF2883 0.62 -0.1
309,852 - GFF2883 0.62 +1.9
309,852 - GFF2883 0.62 +0.5
309,852 - GFF2883 0.62 +1.3
309,852 - GFF2883 0.62 -2.1
309,852 - GFF2883 0.62 +0.1
309,938 + GFF2883 0.69 -3.2
309,938 + GFF2883 0.69 +0.4
309,938 + GFF2883 0.69 -2.0
309,938 + GFF2883 0.69 -1.3
309,938 + GFF2883 0.69 -1.1
309,938 + GFF2883 0.69 -2.2
309,938 + GFF2883 0.69 +0.1
309,939 - GFF2883 0.70 -1.7
309,939 - GFF2883 0.70 +1.7
309,939 - GFF2883 0.70 +0.4
309,939 - GFF2883 0.70 -0.2
309,939 - GFF2883 0.70 +0.7
309,939 - GFF2883 0.70 +0.5
309,939 - GFF2883 0.70 +0.2
309,939 - GFF2883 0.70 -1.2
309,939 - GFF2883 0.70 +0.7
309,939 - GFF2883 0.70 +1.6
309,986 + GFF2883 0.73 -1.5
309,986 + GFF2883 0.73 +0.0
309,986 + GFF2883 0.73 +0.7
309,986 + GFF2883 0.73 +0.7
309,986 + GFF2883 0.73 +3.5
309,986 + GFF2883 0.73 -2.7
309,987 - GFF2883 0.74 +2.3
309,987 - GFF2883 0.74 -0.6
309,987 - GFF2883 0.74 -2.2
309,987 - GFF2883 0.74 -1.0
309,987 - GFF2883 0.74 -1.3
309,987 - GFF2883 0.74 -3.1
309,989 + GFF2883 0.74 -2.9
310,299 + -1.3
310,299 + -1.3
310,300 - +2.1
310,300 - -1.0
310,300 - -3.0
310,300 - +1.0
310,300 - +0.7
310,560 + GFF2884 0.27 -1.1
310,560 + GFF2884 0.27 -1.7
310,560 + GFF2884 0.27 -0.4
310,560 + GFF2884 0.27 -3.7
310,561 - GFF2884 0.27 +0.3
310,561 - GFF2884 0.27 -1.0
310,561 - GFF2884 0.27 -1.1
310,561 - GFF2884 0.27 -2.1
310,561 - GFF2884 0.27 -0.9
310,561 - GFF2884 0.27 -0.6
310,561 - GFF2884 0.27 +0.1
310,561 - GFF2884 0.27 -0.3
310,576 + GFF2884 0.29 -0.3
310,576 + GFF2884 0.29 +0.1
310,577 - GFF2884 0.29 -0.3
310,577 - GFF2884 0.29 -0.8
310,577 - GFF2884 0.29 +0.9
311,038 + GFF2884 0.78 -0.2
311,038 + GFF2884 0.78 -3.2
311,039 - GFF2884 0.78 -1.9
311,273 + +0.7
311,274 - +1.4
311,287 + -2.7
311,287 + -0.6
311,287 + +1.3
311,288 - -0.9
311,288 - -4.0
311,288 - +1.0

Or see this region's nucleotide sequence