Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2784 and GFF2785 are separated by 87 nucleotides GFF2785 and GFF2786 are separated by 85 nucleotides GFF2786 and GFF2787 are separated by 14 nucleotides GFF2787 and GFF2788 are separated by 9 nucleotides
GFF2784 - Peptidase, M20/M25/M40 family, at 214,003 to 215,358
GFF2784
GFF2785 - hypothetical protein, at 215,446 to 215,898
GFF2785
GFF2786 - Sulfate transporter family protein, at 215,984 to 217,711
GFF2786
GFF2787 - Transcriptional regulator PA1859, LysR family, at 217,726 to 218,610
GFF2787
GFF2788 - FIG003461: hypothetical protein, at 218,620 to 219,201
GFF2788
Position (kb) 215
216
217
218 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 215.400 kb on + strand at 215.400 kb on + strand at 215.400 kb on + strand at 215.400 kb on + strand at 215.428 kb on + strand at 215.674 kb on + strand, within GFF2785 at 215.675 kb on - strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.692 kb on + strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.693 kb on - strand, within GFF2785 at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.866 kb on + strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.867 kb on - strand at 215.896 kb on + strand at 215.896 kb on + strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.897 kb on - strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.927 kb on + strand at 215.928 kb on - strand at 215.928 kb on - strand at 216.137 kb on + strand at 216.137 kb on + strand at 216.137 kb on + strand at 216.137 kb on + strand at 216.138 kb on - strand at 216.138 kb on - strand at 216.138 kb on - strand at 216.176 kb on + strand, within GFF2786 at 216.177 kb on - strand, within GFF2786 at 216.659 kb on + strand, within GFF2786 at 216.659 kb on + strand, within GFF2786 at 216.660 kb on - strand, within GFF2786 at 216.716 kb on + strand, within GFF2786 at 216.717 kb on - strand, within GFF2786 at 216.717 kb on - strand, within GFF2786 at 216.717 kb on - strand, within GFF2786 at 216.717 kb on - strand, within GFF2786 at 216.953 kb on + strand, within GFF2786 at 216.953 kb on + strand, within GFF2786 at 216.953 kb on + strand, within GFF2786 at 216.953 kb on + strand, within GFF2786 at 216.953 kb on + strand, within GFF2786 at 216.954 kb on - strand, within GFF2786 at 216.954 kb on - strand, within GFF2786 at 216.954 kb on - strand, within GFF2786 at 217.037 kb on + strand, within GFF2786 at 217.037 kb on + strand, within GFF2786 at 217.037 kb on + strand, within GFF2786 at 217.037 kb on + strand, within GFF2786 at 217.037 kb on + strand, within GFF2786 at 217.038 kb on - strand, within GFF2786 at 217.038 kb on - strand, within GFF2786 at 217.038 kb on - strand, within GFF2786 at 217.038 kb on - strand, within GFF2786 at 217.196 kb on + strand, within GFF2786 at 217.196 kb on + strand, within GFF2786 at 217.196 kb on + strand, within GFF2786 at 217.196 kb on + strand, within GFF2786 at 217.196 kb on + strand, within GFF2786 at 217.196 kb on + strand, within GFF2786 at 217.196 kb on + strand, within GFF2786 at 217.197 kb on - strand, within GFF2786 at 217.197 kb on - strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.238 kb on + strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.239 kb on - strand, within GFF2786 at 217.244 kb on + strand, within GFF2786 at 217.244 kb on + strand, within GFF2786 at 217.244 kb on + strand, within GFF2786 at 217.244 kb on + strand, within GFF2786 at 217.244 kb on + strand, within GFF2786 at 217.244 kb on + strand, within GFF2786 at 217.245 kb on - strand, within GFF2786 at 217.245 kb on - strand, within GFF2786 at 217.245 kb on - strand, within GFF2786 at 217.245 kb on - strand, within GFF2786 at 217.346 kb on + strand, within GFF2786 at 217.346 kb on + strand, within GFF2786 at 217.346 kb on + strand, within GFF2786 at 217.346 kb on + strand, within GFF2786 at 217.347 kb on - strand, within GFF2786 at 217.347 kb on - strand, within GFF2786 at 217.347 kb on - strand, within GFF2786 at 217.625 kb on + strand at 218.080 kb on + strand, within GFF2787 at 218.081 kb on - strand, within GFF2787 at 218.516 kb on + strand, within GFF2787 at 218.516 kb on + strand, within GFF2787 at 218.516 kb on + strand, within GFF2787 at 218.516 kb on + strand, within GFF2787 at 218.517 kb on - strand, within GFF2787 at 218.517 kb on - strand, within GFF2787 at 218.517 kb on - strand, within GFF2787 at 218.517 kb on - strand, within GFF2787 at 218.517 kb on - strand, within GFF2787 at 218.517 kb on - strand, within GFF2787 at 218.539 kb on + strand at 218.539 kb on + strand at 218.540 kb on - strand at 218.540 kb on - strand at 218.540 kb on - strand at 218.540 kb on - strand at 218.540 kb on - strand at 218.540 kb on - strand at 218.540 kb on - strand at 218.542 kb on + strand at 218.542 kb on + strand at 218.542 kb on + strand at 218.543 kb on - strand at 218.543 kb on - strand at 218.702 kb on + strand, within GFF2788 at 218.702 kb on + strand, within GFF2788 at 218.702 kb on + strand, within GFF2788 at 218.703 kb on - strand, within GFF2788
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 215,400 + +0.3 215,400 + -0.9 215,400 + -0.9 215,400 + +0.7 215,428 + -2.3 215,674 + GFF2785 0.50 -0.1 215,675 - GFF2785 0.51 -0.0 215,692 + GFF2785 0.54 -0.4 215,692 + GFF2785 0.54 -2.6 215,692 + GFF2785 0.54 -1.2 215,692 + GFF2785 0.54 -0.0 215,692 + GFF2785 0.54 -0.9 215,692 + GFF2785 0.54 +1.6 215,693 - GFF2785 0.55 +1.2 215,693 - GFF2785 0.55 +0.1 215,693 - GFF2785 0.55 -3.9 215,693 - GFF2785 0.55 +0.0 215,693 - GFF2785 0.55 +2.1 215,693 - GFF2785 0.55 +0.9 215,693 - GFF2785 0.55 +1.7 215,693 - GFF2785 0.55 +0.2 215,866 + -2.3 215,866 + +0.9 215,866 + +0.9 215,866 + -0.3 215,866 + -0.3 215,866 + -1.0 215,867 - +0.1 215,867 - -0.1 215,867 - +0.4 215,867 - -0.0 215,867 - +0.6 215,896 + +1.9 215,896 + +0.2 215,897 - +2.2 215,897 - -0.6 215,897 - +0.4 215,897 - -1.7 215,897 - +0.8 215,897 - +0.5 215,897 - +0.5 215,897 - -0.2 215,897 - +1.0 215,897 - -1.0 215,927 + -1.1 215,927 + -0.4 215,927 + -0.3 215,927 + -1.3 215,927 + -1.3 215,928 - -1.2 215,928 - -0.7 216,137 + -2.6 216,137 + +2.3 216,137 + -1.5 216,137 + +0.7 216,138 - -1.2 216,138 - +1.7 216,138 - -2.0 216,176 + GFF2786 0.11 -0.0 216,177 - GFF2786 0.11 -0.9 216,659 + GFF2786 0.39 +0.6 216,659 + GFF2786 0.39 -2.6 216,660 - GFF2786 0.39 -0.1 216,716 + GFF2786 0.42 -2.5 216,717 - GFF2786 0.42 +0.0 216,717 - GFF2786 0.42 -2.6 216,717 - GFF2786 0.42 -0.7 216,717 - GFF2786 0.42 +0.4 216,953 + GFF2786 0.56 -0.1 216,953 + GFF2786 0.56 -0.0 216,953 + GFF2786 0.56 -2.9 216,953 + GFF2786 0.56 +0.7 216,953 + GFF2786 0.56 -0.2 216,954 - GFF2786 0.56 -1.3 216,954 - GFF2786 0.56 +1.2 216,954 - GFF2786 0.56 +0.4 217,037 + GFF2786 0.61 -0.3 217,037 + GFF2786 0.61 -0.5 217,037 + GFF2786 0.61 -1.5 217,037 + GFF2786 0.61 +1.5 217,037 + GFF2786 0.61 +1.9 217,038 - GFF2786 0.61 -3.0 217,038 - GFF2786 0.61 -1.5 217,038 - GFF2786 0.61 -3.5 217,038 - GFF2786 0.61 -0.3 217,196 + GFF2786 0.70 -0.9 217,196 + GFF2786 0.70 -0.9 217,196 + GFF2786 0.70 -0.3 217,196 + GFF2786 0.70 +0.4 217,196 + GFF2786 0.70 +0.8 217,196 + GFF2786 0.70 +0.3 217,196 + GFF2786 0.70 -1.2 217,197 - GFF2786 0.70 -2.3 217,197 - GFF2786 0.70 +1.1 217,238 + GFF2786 0.73 -1.2 217,238 + GFF2786 0.73 +2.2 217,238 + GFF2786 0.73 -0.1 217,238 + GFF2786 0.73 -3.2 217,238 + GFF2786 0.73 -0.7 217,238 + GFF2786 0.73 -0.3 217,238 + GFF2786 0.73 +0.3 217,238 + GFF2786 0.73 -0.1 217,239 - GFF2786 0.73 +0.9 217,239 - GFF2786 0.73 -2.2 217,239 - GFF2786 0.73 -0.9 217,239 - GFF2786 0.73 +1.1 217,239 - GFF2786 0.73 +1.7 217,239 - GFF2786 0.73 -1.9 217,239 - GFF2786 0.73 +1.0 217,239 - GFF2786 0.73 -2.0 217,239 - GFF2786 0.73 +0.3 217,239 - GFF2786 0.73 -1.2 217,239 - GFF2786 0.73 -1.8 217,244 + GFF2786 0.73 -0.6 217,244 + GFF2786 0.73 -1.9 217,244 + GFF2786 0.73 -2.5 217,244 + GFF2786 0.73 -1.7 217,244 + GFF2786 0.73 -0.7 217,244 + GFF2786 0.73 -0.9 217,245 - GFF2786 0.73 -0.7 217,245 - GFF2786 0.73 -2.7 217,245 - GFF2786 0.73 -2.4 217,245 - GFF2786 0.73 +0.7 217,346 + GFF2786 0.79 -3.8 217,346 + GFF2786 0.79 -2.5 217,346 + GFF2786 0.79 -2.5 217,346 + GFF2786 0.79 +0.3 217,347 - GFF2786 0.79 -1.7 217,347 - GFF2786 0.79 +0.2 217,347 - GFF2786 0.79 -0.3 217,625 + +1.0 218,080 + GFF2787 0.40 +0.7 218,081 - GFF2787 0.40 +0.0 218,516 + GFF2787 0.89 -1.3 218,516 + GFF2787 0.89 +0.1 218,516 + GFF2787 0.89 -0.6 218,516 + GFF2787 0.89 +0.8 218,517 - GFF2787 0.89 -2.1 218,517 - GFF2787 0.89 +0.6 218,517 - GFF2787 0.89 +0.1 218,517 - GFF2787 0.89 -2.0 218,517 - GFF2787 0.89 -2.0 218,517 - GFF2787 0.89 -2.7 218,539 + -2.8 218,539 + -2.0 218,540 - +0.4 218,540 - -0.7 218,540 - -0.7 218,540 - -2.8 218,540 - +1.7 218,540 - +0.4 218,540 - -0.7 218,542 + -2.3 218,542 + +0.2 218,542 + +0.3 218,543 - +1.9 218,543 - +0.1 218,702 + GFF2788 0.14 -0.7 218,702 + GFF2788 0.14 +1.1 218,702 + GFF2788 0.14 -0.5 218,703 - GFF2788 0.14 +0.9
Or see this region's nucleotide sequence