Strain Fitness in Variovorax sp. SCN45 around GFF2752

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2751 and GFF2752 overlap by 4 nucleotidesGFF2752 and GFF2753 are separated by 55 nucleotides GFF2751 - CTP synthase (EC 6.3.4.2), at 184,033 to 185,715 GFF2751 GFF2752 - FIG00974677: hypothetical protein, at 185,712 to 186,002 GFF2752 GFF2753 - Enolase (EC 4.2.1.11), at 186,058 to 187,341 GFF2753 Position (kb) 185 186 187Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.724 kb on + strandat 185.725 kb on - strandat 185.725 kb on - strandat 185.725 kb on - strandat 185.764 kb on - strand, within GFF2752at 185.772 kb on + strand, within GFF2752at 185.772 kb on + strand, within GFF2752at 185.772 kb on + strand, within GFF2752at 185.772 kb on + strand, within GFF2752at 185.772 kb on + strand, within GFF2752at 185.772 kb on + strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.773 kb on - strand, within GFF2752at 185.919 kb on + strand, within GFF2752at 185.919 kb on + strand, within GFF2752at 185.919 kb on + strand, within GFF2752at 185.919 kb on + strand, within GFF2752at 185.920 kb on - strand, within GFF2752at 185.920 kb on - strand, within GFF2752at 185.934 kb on + strand, within GFF2752at 185.934 kb on + strand, within GFF2752at 185.934 kb on + strand, within GFF2752at 185.934 kb on + strand, within GFF2752at 185.935 kb on - strand, within GFF2752at 185.935 kb on - strand, within GFF2752at 185.935 kb on - strand, within GFF2752at 186.018 kb on + strandat 186.018 kb on + strandat 186.018 kb on + strandat 186.018 kb on + strandat 186.019 kb on - strandat 186.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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185,724 + -0.3
185,724 + +1.4
185,724 + -0.9
185,724 + -0.9
185,724 + -1.3
185,724 + +0.5
185,724 + -0.4
185,724 + -2.8
185,724 + +0.9
185,724 + -1.3
185,724 + -0.7
185,725 - +0.1
185,725 - -0.3
185,725 - +1.3
185,764 - GFF2752 0.18 +0.0
185,772 + GFF2752 0.21 -2.0
185,772 + GFF2752 0.21 -0.9
185,772 + GFF2752 0.21 +0.4
185,772 + GFF2752 0.21 -0.9
185,772 + GFF2752 0.21 -0.3
185,772 + GFF2752 0.21 -0.7
185,773 - GFF2752 0.21 +0.4
185,773 - GFF2752 0.21 -1.8
185,773 - GFF2752 0.21 -2.5
185,773 - GFF2752 0.21 +0.4
185,773 - GFF2752 0.21 +1.2
185,773 - GFF2752 0.21 +1.3
185,773 - GFF2752 0.21 +0.5
185,773 - GFF2752 0.21 +0.8
185,919 + GFF2752 0.71 -0.2
185,919 + GFF2752 0.71 -0.2
185,919 + GFF2752 0.71 -1.9
185,919 + GFF2752 0.71 -0.9
185,920 - GFF2752 0.71 -2.5
185,920 - GFF2752 0.71 +0.9
185,934 + GFF2752 0.76 +1.1
185,934 + GFF2752 0.76 +2.9
185,934 + GFF2752 0.76 -0.7
185,934 + GFF2752 0.76 +2.0
185,935 - GFF2752 0.77 -3.9
185,935 - GFF2752 0.77 -2.0
185,935 - GFF2752 0.77 +0.2
186,018 + -1.4
186,018 + -2.7
186,018 + -0.3
186,018 + -1.3
186,019 - +1.1
186,019 - +0.1

Or see this region's nucleotide sequence