Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2677 and GFF2678 are separated by 189 nucleotides GFF2678 and GFF2679 are separated by 24 nucleotides GFF2679 and GFF2680 are separated by 30 nucleotides GFF2680 and GFF2681 are separated by 278 nucleotides
GFF2677 - Aerobic glycerol-3-phosphate dehydrogenase (EC 1.1.5.3), at 98,832 to 100,415
GFF2677
GFF2678 - Glycerol-3-phosphate regulon repressor GlpR, at 100,605 to 101,375
GFF2678
GFF2679 - Glycerol kinase (EC 2.7.1.30), at 101,400 to 102,896
GFF2679
GFF2680 - Protein of unknown function DUF1058, at 102,927 to 103,388
GFF2680
GFF2681 - Phosphoethanolamine transferase EptC [E.coli], specific for LPS heptose I residue, at 103,667 to 105,241
GFF2681
Position (kb) 101
102
103 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 100.424 kb on + strand at 100.424 kb on + strand at 100.424 kb on + strand at 100.424 kb on + strand at 100.424 kb on + strand at 100.425 kb on - strand at 100.425 kb on - strand at 100.425 kb on - strand at 100.425 kb on - strand at 100.432 kb on - strand at 100.466 kb on + strand at 100.467 kb on - strand at 100.549 kb on + strand at 100.550 kb on - strand at 100.566 kb on + strand at 100.566 kb on + strand at 100.566 kb on + strand at 100.566 kb on + strand at 100.567 kb on - strand at 100.567 kb on - strand at 100.723 kb on + strand, within GFF2678 at 100.723 kb on + strand, within GFF2678 at 100.723 kb on + strand, within GFF2678 at 100.723 kb on + strand, within GFF2678 at 100.723 kb on + strand, within GFF2678 at 100.724 kb on - strand, within GFF2678 at 100.806 kb on + strand, within GFF2678 at 100.873 kb on + strand, within GFF2678 at 101.173 kb on + strand, within GFF2678 at 101.173 kb on + strand, within GFF2678 at 101.174 kb on - strand, within GFF2678 at 101.174 kb on - strand, within GFF2678 at 101.409 kb on + strand at 101.409 kb on + strand at 101.409 kb on + strand at 101.409 kb on + strand at 101.409 kb on + strand at 101.409 kb on + strand at 101.410 kb on - strand at 101.410 kb on - strand at 101.410 kb on - strand at 101.410 kb on - strand at 101.410 kb on - strand at 101.410 kb on - strand at 101.497 kb on - strand at 101.511 kb on + strand at 101.511 kb on + strand at 101.512 kb on - strand at 101.799 kb on + strand, within GFF2679 at 101.800 kb on - strand, within GFF2679 at 101.800 kb on - strand, within GFF2679 at 102.186 kb on + strand, within GFF2679 at 102.186 kb on + strand, within GFF2679 at 102.187 kb on - strand, within GFF2679 at 102.187 kb on - strand, within GFF2679 at 102.187 kb on - strand, within GFF2679 at 102.187 kb on - strand, within GFF2679 at 102.292 kb on - strand, within GFF2679 at 102.292 kb on - strand, within GFF2679 at 102.292 kb on - strand, within GFF2679 at 102.296 kb on + strand, within GFF2679 at 102.297 kb on - strand, within GFF2679 at 102.456 kb on + strand, within GFF2679 at 102.549 kb on + strand, within GFF2679 at 102.550 kb on - strand, within GFF2679 at 102.550 kb on - strand, within GFF2679 at 102.550 kb on - strand, within GFF2679 at 102.738 kb on + strand, within GFF2679 at 102.739 kb on - strand, within GFF2679 at 102.739 kb on - strand, within GFF2679 at 102.739 kb on - strand, within GFF2679 at 102.739 kb on - strand, within GFF2679 at 102.765 kb on + strand at 102.765 kb on + strand at 102.766 kb on - strand at 102.929 kb on - strand at 102.929 kb on - strand at 103.033 kb on + strand, within GFF2680 at 103.471 kb on + strand at 103.472 kb on - strand at 103.862 kb on + strand, within GFF2681 at 103.862 kb on + strand, within GFF2681 at 103.862 kb on + strand, within GFF2681 at 103.863 kb on - strand, within GFF2681 at 103.863 kb on - strand, within GFF2681 at 103.863 kb on - strand, within GFF2681 at 103.877 kb on + strand, within GFF2681 at 103.877 kb on + strand, within GFF2681 at 103.877 kb on + strand, within GFF2681 at 103.877 kb on + strand, within GFF2681 at 103.877 kb on + strand, within GFF2681 at 103.877 kb on + strand, within GFF2681 at 103.878 kb on - strand, within GFF2681 at 103.878 kb on - strand, within GFF2681 at 103.878 kb on - strand, within GFF2681 at 103.878 kb on - strand, within GFF2681
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 100,424 + -2.2 100,424 + +0.1 100,424 + -0.0 100,424 + -1.7 100,424 + -0.9 100,425 - -0.2 100,425 - -0.9 100,425 - -0.1 100,425 - -2.2 100,432 - +1.0 100,466 + -0.9 100,467 - -1.3 100,549 + -4.7 100,550 - +0.7 100,566 + -0.8 100,566 + +1.7 100,566 + +2.1 100,566 + +1.4 100,567 - -0.9 100,567 - -2.7 100,723 + GFF2678 0.15 -2.7 100,723 + GFF2678 0.15 +4.7 100,723 + GFF2678 0.15 -1.0 100,723 + GFF2678 0.15 +0.6 100,723 + GFF2678 0.15 -2.5 100,724 - GFF2678 0.15 -0.1 100,806 + GFF2678 0.26 +0.0 100,873 + GFF2678 0.35 -1.0 101,173 + GFF2678 0.74 +1.6 101,173 + GFF2678 0.74 +0.1 101,174 - GFF2678 0.74 -1.4 101,174 - GFF2678 0.74 +0.5 101,409 + -2.3 101,409 + -1.8 101,409 + -2.6 101,409 + -0.8 101,409 + -2.9 101,409 + -0.3 101,410 - +1.5 101,410 - +1.2 101,410 - -3.0 101,410 - -2.6 101,410 - +0.7 101,410 - -4.5 101,497 - +0.4 101,511 + +1.7 101,511 + -2.1 101,512 - -1.0 101,799 + GFF2679 0.27 +0.7 101,800 - GFF2679 0.27 +0.7 101,800 - GFF2679 0.27 -0.4 102,186 + GFF2679 0.53 -1.3 102,186 + GFF2679 0.53 -0.2 102,187 - GFF2679 0.53 +1.4 102,187 - GFF2679 0.53 -0.5 102,187 - GFF2679 0.53 -1.3 102,187 - GFF2679 0.53 +1.4 102,292 - GFF2679 0.60 -1.6 102,292 - GFF2679 0.60 +0.9 102,292 - GFF2679 0.60 +0.9 102,296 + GFF2679 0.60 +2.3 102,297 - GFF2679 0.60 -2.3 102,456 + GFF2679 0.71 +0.1 102,549 + GFF2679 0.77 -2.4 102,550 - GFF2679 0.77 -0.3 102,550 - GFF2679 0.77 -1.5 102,550 - GFF2679 0.77 -2.2 102,738 + GFF2679 0.89 -1.7 102,739 - GFF2679 0.89 +0.9 102,739 - GFF2679 0.89 +1.7 102,739 - GFF2679 0.89 -0.9 102,739 - GFF2679 0.89 -1.4 102,765 + +0.6 102,765 + -0.6 102,766 - -1.5 102,929 - -1.1 102,929 - +0.5 103,033 + GFF2680 0.23 +0.3 103,471 + -0.9 103,472 - -0.4 103,862 + GFF2681 0.12 -0.9 103,862 + GFF2681 0.12 -0.1 103,862 + GFF2681 0.12 -1.2 103,863 - GFF2681 0.12 -0.2 103,863 - GFF2681 0.12 -1.5 103,863 - GFF2681 0.12 +0.8 103,877 + GFF2681 0.13 -0.6 103,877 + GFF2681 0.13 -0.9 103,877 + GFF2681 0.13 +0.7 103,877 + GFF2681 0.13 +2.4 103,877 + GFF2681 0.13 -1.2 103,877 + GFF2681 0.13 +0.3 103,878 - GFF2681 0.13 +2.3 103,878 - GFF2681 0.13 -3.3 103,878 - GFF2681 0.13 -1.9 103,878 - GFF2681 0.13 -0.6
Or see this region's nucleotide sequence