Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2549 and GFF2550 are separated by 7 nucleotides GFF2550 and GFF2551 overlap by 4 nucleotides GFF2551 and GFF2552 are separated by 73 nucleotides
GFF2549 - Aspartyl-tRNA synthetase (EC 6.1.1.12) @ Aspartyl-tRNA(Asn) synthetase (EC 6.1.1.23), at 611,935 to 613,740
GFF2549
GFF2550 - Dihydroneopterin triphosphate pyrophosphohydrolase type 2, at 613,748 to 614,224
GFF2550
GFF2551 - Endonuclease/exonuclease/phosphatase, at 614,221 to 614,988
GFF2551
GFF2552 - GTP cyclohydrolase I (EC 3.5.4.16) type 1, at 615,062 to 615,793
GFF2552
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 614.007 kb on - strand, within GFF2550 at 614.007 kb on - strand, within GFF2550 at 614.015 kb on + strand, within GFF2550 at 614.016 kb on - strand, within GFF2550 at 614.016 kb on - strand, within GFF2550 at 614.148 kb on - strand, within GFF2550 at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.269 kb on + strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.270 kb on - strand at 614.464 kb on + strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.465 kb on - strand, within GFF2551 at 614.476 kb on + strand, within GFF2551 at 614.476 kb on + strand, within GFF2551 at 614.477 kb on - strand, within GFF2551 at 614.779 kb on + strand, within GFF2551 at 614.780 kb on - strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.842 kb on + strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.843 kb on - strand, within GFF2551 at 614.881 kb on + strand, within GFF2551 at 614.881 kb on + strand, within GFF2551 at 614.930 kb on + strand at 614.930 kb on + strand at 614.982 kb on + strand at 615.049 kb on + strand at 615.050 kb on - strand at 615.050 kb on - strand at 615.050 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 614,007 - GFF2550 0.54 +1.4 614,007 - GFF2550 0.54 +0.2 614,015 + GFF2550 0.56 +1.2 614,016 - GFF2550 0.56 +0.1 614,016 - GFF2550 0.56 +1.0 614,148 - GFF2550 0.84 +0.9 614,269 + -1.3 614,269 + +0.3 614,269 + -1.1 614,269 + -1.7 614,269 + -1.1 614,269 + +0.9 614,269 + -0.1 614,269 + +0.5 614,270 - -0.9 614,270 - -3.2 614,270 - -2.3 614,270 - +1.9 614,270 - +0.9 614,270 - -1.1 614,270 - -0.9 614,270 - +0.3 614,270 - -0.2 614,464 + GFF2551 0.32 +0.2 614,465 - GFF2551 0.32 -0.3 614,465 - GFF2551 0.32 +1.9 614,465 - GFF2551 0.32 +0.9 614,465 - GFF2551 0.32 -2.5 614,465 - GFF2551 0.32 -3.6 614,465 - GFF2551 0.32 -0.5 614,465 - GFF2551 0.32 -0.4 614,465 - GFF2551 0.32 -0.9 614,476 + GFF2551 0.33 -1.1 614,476 + GFF2551 0.33 +1.9 614,477 - GFF2551 0.33 -2.0 614,779 + GFF2551 0.73 -0.4 614,780 - GFF2551 0.73 +0.9 614,842 + GFF2551 0.81 +1.0 614,842 + GFF2551 0.81 -1.4 614,842 + GFF2551 0.81 -2.5 614,842 + GFF2551 0.81 +2.0 614,842 + GFF2551 0.81 +1.9 614,842 + GFF2551 0.81 -1.4 614,842 + GFF2551 0.81 -0.1 614,843 - GFF2551 0.81 +1.6 614,843 - GFF2551 0.81 +0.3 614,843 - GFF2551 0.81 -0.4 614,843 - GFF2551 0.81 +1.6 614,843 - GFF2551 0.81 -0.4 614,843 - GFF2551 0.81 +0.8 614,843 - GFF2551 0.81 +1.9 614,843 - GFF2551 0.81 -1.6 614,843 - GFF2551 0.81 -3.2 614,881 + GFF2551 0.86 +0.3 614,881 + GFF2551 0.86 -2.4 614,930 + -2.0 614,930 + -1.6 614,982 + -0.2 615,049 + -1.9 615,050 - +1.3 615,050 - +1.5 615,050 - -1.9
Or see this region's nucleotide sequence