Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2505 and GFF2506 are separated by 1 nucleotides GFF2506 and GFF2507 are separated by 69 nucleotides GFF2507 and GFF2508 are separated by 11 nucleotides
GFF2505 - hypothetical protein, at 565,957 to 566,991
GFF2505
GFF2506 - Probable poly(beta-D-mannuronate) O-acetylase (EC 2.3.1.-), at 566,993 to 568,486
GFF2506
GFF2507 - Dephospho-CoA kinase (EC 2.7.1.24), at 568,556 to 569,164
GFF2507
GFF2508 - Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-), at 569,176 to 570,141
GFF2508
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 566.010 kb on + strand at 566.010 kb on + strand at 566.010 kb on + strand at 566.011 kb on - strand at 566.031 kb on - strand at 566.031 kb on - strand at 566.124 kb on + strand, within GFF2505 at 566.125 kb on - strand, within GFF2505 at 566.177 kb on + strand, within GFF2505 at 566.177 kb on + strand, within GFF2505 at 566.177 kb on + strand, within GFF2505 at 566.219 kb on + strand, within GFF2505 at 566.438 kb on + strand, within GFF2505 at 566.438 kb on + strand, within GFF2505 at 566.439 kb on - strand, within GFF2505 at 566.439 kb on - strand, within GFF2505 at 566.708 kb on + strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.709 kb on - strand, within GFF2505 at 566.742 kb on - strand, within GFF2505 at 566.888 kb on + strand at 566.888 kb on + strand at 566.893 kb on + strand at 566.893 kb on + strand at 566.940 kb on - strand at 567.021 kb on + strand at 567.021 kb on + strand at 567.021 kb on + strand at 567.021 kb on + strand at 567.022 kb on - strand at 567.022 kb on - strand at 567.022 kb on - strand at 567.058 kb on - strand at 567.285 kb on + strand, within GFF2506 at 567.285 kb on + strand, within GFF2506 at 567.285 kb on + strand, within GFF2506 at 567.285 kb on + strand, within GFF2506 at 567.286 kb on - strand, within GFF2506 at 567.286 kb on - strand, within GFF2506 at 567.286 kb on - strand, within GFF2506 at 567.286 kb on - strand, within GFF2506 at 567.381 kb on + strand, within GFF2506 at 567.381 kb on + strand, within GFF2506 at 567.381 kb on + strand, within GFF2506 at 567.382 kb on - strand, within GFF2506 at 567.444 kb on + strand, within GFF2506 at 567.444 kb on + strand, within GFF2506 at 567.444 kb on + strand, within GFF2506 at 567.444 kb on + strand, within GFF2506 at 567.445 kb on - strand, within GFF2506 at 567.445 kb on - strand, within GFF2506 at 567.534 kb on + strand, within GFF2506 at 567.534 kb on + strand, within GFF2506 at 567.535 kb on - strand, within GFF2506 at 567.535 kb on - strand, within GFF2506 at 567.535 kb on - strand, within GFF2506 at 567.535 kb on - strand, within GFF2506 at 567.535 kb on - strand, within GFF2506 at 567.576 kb on + strand, within GFF2506 at 567.576 kb on + strand, within GFF2506 at 567.576 kb on + strand, within GFF2506 at 567.576 kb on + strand, within GFF2506 at 567.576 kb on + strand, within GFF2506 at 567.576 kb on + strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.577 kb on - strand, within GFF2506 at 567.582 kb on + strand, within GFF2506 at 567.582 kb on + strand, within GFF2506 at 567.582 kb on + strand, within GFF2506 at 567.582 kb on + strand, within GFF2506 at 567.582 kb on + strand, within GFF2506 at 567.582 kb on + strand, within GFF2506 at 567.583 kb on - strand, within GFF2506 at 567.583 kb on - strand, within GFF2506 at 567.651 kb on + strand, within GFF2506 at 567.652 kb on - strand, within GFF2506 at 567.652 kb on - strand, within GFF2506 at 567.652 kb on - strand, within GFF2506 at 567.738 kb on + strand, within GFF2506 at 567.739 kb on - strand, within GFF2506 at 567.751 kb on + strand, within GFF2506 at 567.751 kb on + strand, within GFF2506 at 567.751 kb on + strand, within GFF2506 at 567.751 kb on + strand, within GFF2506 at 567.752 kb on - strand, within GFF2506 at 567.753 kb on + strand, within GFF2506 at 567.753 kb on + strand, within GFF2506 at 567.753 kb on + strand, within GFF2506 at 567.754 kb on - strand, within GFF2506 at 567.778 kb on + strand, within GFF2506 at 567.780 kb on + strand, within GFF2506 at 567.780 kb on + strand, within GFF2506 at 567.780 kb on + strand, within GFF2506 at 567.781 kb on - strand, within GFF2506 at 567.781 kb on - strand, within GFF2506 at 567.781 kb on - strand, within GFF2506 at 567.781 kb on - strand, within GFF2506 at 567.781 kb on - strand, within GFF2506 at 567.831 kb on + strand, within GFF2506 at 567.831 kb on + strand, within GFF2506 at 567.831 kb on + strand, within GFF2506 at 567.924 kb on + strand, within GFF2506 at 567.924 kb on + strand, within GFF2506 at 567.924 kb on + strand, within GFF2506 at 567.924 kb on + strand, within GFF2506 at 567.924 kb on + strand, within GFF2506 at 567.925 kb on - strand, within GFF2506 at 567.925 kb on - strand, within GFF2506 at 567.925 kb on - strand, within GFF2506 at 567.925 kb on - strand, within GFF2506 at 567.999 kb on + strand, within GFF2506 at 567.999 kb on + strand, within GFF2506 at 567.999 kb on + strand, within GFF2506 at 567.999 kb on + strand, within GFF2506 at 567.999 kb on + strand, within GFF2506 at 567.999 kb on + strand, within GFF2506 at 568.000 kb on - strand, within GFF2506 at 568.000 kb on - strand, within GFF2506 at 568.000 kb on - strand, within GFF2506 at 568.000 kb on - strand, within GFF2506 at 568.005 kb on - strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.017 kb on + strand, within GFF2506 at 568.018 kb on - strand, within GFF2506 at 568.018 kb on - strand, within GFF2506 at 568.018 kb on - strand, within GFF2506 at 568.089 kb on + strand, within GFF2506 at 568.090 kb on - strand, within GFF2506 at 568.090 kb on - strand, within GFF2506 at 568.191 kb on + strand, within GFF2506 at 568.191 kb on + strand, within GFF2506 at 568.192 kb on - strand, within GFF2506 at 568.192 kb on - strand, within GFF2506 at 568.302 kb on + strand, within GFF2506 at 568.303 kb on - strand, within GFF2506 at 568.303 kb on - strand, within GFF2506 at 568.360 kb on - strand at 568.454 kb on + strand at 568.470 kb on + strand at 568.470 kb on + strand at 568.471 kb on - strand at 568.471 kb on - strand at 568.531 kb on + strand at 568.531 kb on + strand at 568.558 kb on - strand at 569.380 kb on - strand, within GFF2508 at 569.384 kb on + strand, within GFF2508 at 569.384 kb on + strand, within GFF2508 at 569.384 kb on + strand, within GFF2508 at 569.384 kb on + strand, within GFF2508 at 569.385 kb on - strand, within GFF2508 at 569.385 kb on - strand, within GFF2508 at 569.435 kb on + strand, within GFF2508 at 569.435 kb on + strand, within GFF2508 at 569.436 kb on - strand, within GFF2508 at 569.436 kb on - strand, within GFF2508 at 569.477 kb on + strand, within GFF2508 at 569.477 kb on + strand, within GFF2508 at 569.477 kb on + strand, within GFF2508 at 569.477 kb on + strand, within GFF2508 at 569.477 kb on + strand, within GFF2508 at 569.478 kb on - strand, within GFF2508 at 569.478 kb on - strand, within GFF2508 at 569.478 kb on - strand, within GFF2508 at 569.478 kb on - strand, within GFF2508 at 569.478 kb on - strand, within GFF2508 at 569.478 kb on - strand, within GFF2508 at 569.478 kb on - strand, within GFF2508 at 569.478 kb on - strand, within GFF2508
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 566,010 + +0.2 566,010 + -2.4 566,010 + -2.4 566,011 - -0.1 566,031 - +2.0 566,031 - -0.0 566,124 + GFF2505 0.16 +1.9 566,125 - GFF2505 0.16 -1.6 566,177 + GFF2505 0.21 +0.5 566,177 + GFF2505 0.21 -2.5 566,177 + GFF2505 0.21 -1.3 566,219 + GFF2505 0.25 -2.7 566,438 + GFF2505 0.46 -0.2 566,438 + GFF2505 0.46 +0.9 566,439 - GFF2505 0.47 -2.4 566,439 - GFF2505 0.47 +0.0 566,708 + GFF2505 0.73 -0.4 566,709 - GFF2505 0.73 -2.6 566,709 - GFF2505 0.73 -0.2 566,709 - GFF2505 0.73 +0.6 566,709 - GFF2505 0.73 +1.2 566,709 - GFF2505 0.73 -1.6 566,709 - GFF2505 0.73 -0.4 566,709 - GFF2505 0.73 -0.1 566,709 - GFF2505 0.73 -1.4 566,709 - GFF2505 0.73 -1.6 566,709 - GFF2505 0.73 -0.4 566,742 - GFF2505 0.76 -0.3 566,888 + +1.8 566,888 + +1.5 566,893 + -3.0 566,893 + +0.2 566,940 - +0.2 567,021 + -2.5 567,021 + -2.9 567,021 + +0.7 567,021 + -1.6 567,022 - -0.9 567,022 - +0.2 567,022 - +0.0 567,058 - -0.3 567,285 + GFF2506 0.20 -0.7 567,285 + GFF2506 0.20 -2.1 567,285 + GFF2506 0.20 +1.4 567,285 + GFF2506 0.20 -0.0 567,286 - GFF2506 0.20 -0.8 567,286 - GFF2506 0.20 +0.2 567,286 - GFF2506 0.20 -3.0 567,286 - GFF2506 0.20 -1.0 567,381 + GFF2506 0.26 -0.7 567,381 + GFF2506 0.26 -0.7 567,381 + GFF2506 0.26 +0.4 567,382 - GFF2506 0.26 -1.4 567,444 + GFF2506 0.30 +1.3 567,444 + GFF2506 0.30 -0.0 567,444 + GFF2506 0.30 +1.4 567,444 + GFF2506 0.30 -1.8 567,445 - GFF2506 0.30 -1.3 567,445 - GFF2506 0.30 -2.0 567,534 + GFF2506 0.36 -2.2 567,534 + GFF2506 0.36 -0.7 567,535 - GFF2506 0.36 -2.4 567,535 - GFF2506 0.36 -2.5 567,535 - GFF2506 0.36 -0.9 567,535 - GFF2506 0.36 +0.9 567,535 - GFF2506 0.36 +4.4 567,576 + GFF2506 0.39 -1.8 567,576 + GFF2506 0.39 +0.5 567,576 + GFF2506 0.39 +1.3 567,576 + GFF2506 0.39 +1.7 567,576 + GFF2506 0.39 -1.8 567,576 + GFF2506 0.39 -0.3 567,577 - GFF2506 0.39 +1.3 567,577 - GFF2506 0.39 +0.9 567,577 - GFF2506 0.39 +0.6 567,577 - GFF2506 0.39 +1.5 567,577 - GFF2506 0.39 +0.3 567,577 - GFF2506 0.39 -2.6 567,577 - GFF2506 0.39 -1.4 567,577 - GFF2506 0.39 -0.1 567,577 - GFF2506 0.39 +0.5 567,577 - GFF2506 0.39 -2.2 567,582 + GFF2506 0.39 -0.7 567,582 + GFF2506 0.39 -0.2 567,582 + GFF2506 0.39 +0.1 567,582 + GFF2506 0.39 +1.7 567,582 + GFF2506 0.39 -2.3 567,582 + GFF2506 0.39 -2.7 567,583 - GFF2506 0.39 -1.6 567,583 - GFF2506 0.39 -0.4 567,651 + GFF2506 0.44 +0.1 567,652 - GFF2506 0.44 +0.4 567,652 - GFF2506 0.44 +1.0 567,652 - GFF2506 0.44 +1.4 567,738 + GFF2506 0.50 +1.4 567,739 - GFF2506 0.50 -2.8 567,751 + GFF2506 0.51 +1.0 567,751 + GFF2506 0.51 -0.5 567,751 + GFF2506 0.51 -0.1 567,751 + GFF2506 0.51 +2.7 567,752 - GFF2506 0.51 -1.8 567,753 + GFF2506 0.51 +0.9 567,753 + GFF2506 0.51 -0.4 567,753 + GFF2506 0.51 -0.9 567,754 - GFF2506 0.51 +1.6 567,778 + GFF2506 0.53 -1.1 567,780 + GFF2506 0.53 -0.7 567,780 + GFF2506 0.53 +4.3 567,780 + GFF2506 0.53 +1.1 567,781 - GFF2506 0.53 -0.1 567,781 - GFF2506 0.53 +0.2 567,781 - GFF2506 0.53 +1.3 567,781 - GFF2506 0.53 +0.3 567,781 - GFF2506 0.53 +0.6 567,831 + GFF2506 0.56 +1.2 567,831 + GFF2506 0.56 +0.9 567,831 + GFF2506 0.56 +1.2 567,924 + GFF2506 0.62 -2.0 567,924 + GFF2506 0.62 +1.2 567,924 + GFF2506 0.62 +0.8 567,924 + GFF2506 0.62 -1.6 567,924 + GFF2506 0.62 -1.3 567,925 - GFF2506 0.62 -1.4 567,925 - GFF2506 0.62 +2.3 567,925 - GFF2506 0.62 +0.2 567,925 - GFF2506 0.62 +0.4 567,999 + GFF2506 0.67 +1.0 567,999 + GFF2506 0.67 -0.0 567,999 + GFF2506 0.67 +0.7 567,999 + GFF2506 0.67 -0.5 567,999 + GFF2506 0.67 -1.6 567,999 + GFF2506 0.67 +1.1 568,000 - GFF2506 0.67 +0.4 568,000 - GFF2506 0.67 -1.1 568,000 - GFF2506 0.67 -0.1 568,000 - GFF2506 0.67 +1.5 568,005 - GFF2506 0.68 -0.3 568,017 + GFF2506 0.69 -2.3 568,017 + GFF2506 0.69 -2.1 568,017 + GFF2506 0.69 -2.2 568,017 + GFF2506 0.69 -1.1 568,017 + GFF2506 0.69 -4.2 568,017 + GFF2506 0.69 +2.2 568,017 + GFF2506 0.69 -0.0 568,017 + GFF2506 0.69 -3.1 568,018 - GFF2506 0.69 -0.2 568,018 - GFF2506 0.69 -1.1 568,018 - GFF2506 0.69 +1.6 568,089 + GFF2506 0.73 -2.2 568,090 - GFF2506 0.73 -1.4 568,090 - GFF2506 0.73 +1.1 568,191 + GFF2506 0.80 -2.0 568,191 + GFF2506 0.80 -1.1 568,192 - GFF2506 0.80 -2.8 568,192 - GFF2506 0.80 -3.1 568,302 + GFF2506 0.88 -2.3 568,303 - GFF2506 0.88 -1.3 568,303 - GFF2506 0.88 +1.1 568,360 - -2.2 568,454 + +0.6 568,470 + +0.1 568,470 + -0.2 568,471 - -0.6 568,471 - -2.8 568,531 + +1.5 568,531 + +1.0 568,558 - -2.4 569,380 - GFF2508 0.21 -2.4 569,384 + GFF2508 0.22 -0.1 569,384 + GFF2508 0.22 +0.9 569,384 + GFF2508 0.22 +2.1 569,384 + GFF2508 0.22 -0.1 569,385 - GFF2508 0.22 +0.1 569,385 - GFF2508 0.22 -2.4 569,435 + GFF2508 0.27 -1.5 569,435 + GFF2508 0.27 +2.3 569,436 - GFF2508 0.27 -0.1 569,436 - GFF2508 0.27 +1.9 569,477 + GFF2508 0.31 +2.1 569,477 + GFF2508 0.31 +0.1 569,477 + GFF2508 0.31 +0.9 569,477 + GFF2508 0.31 +2.8 569,477 + GFF2508 0.31 -2.7 569,478 - GFF2508 0.31 +0.9 569,478 - GFF2508 0.31 +0.9 569,478 - GFF2508 0.31 +1.7 569,478 - GFF2508 0.31 -1.1 569,478 - GFF2508 0.31 +2.7 569,478 - GFF2508 0.31 -0.8 569,478 - GFF2508 0.31 +2.9 569,478 - GFF2508 0.31 -1.8
Or see this region's nucleotide sequence