Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2502 and GFF2503 are separated by 11 nucleotides GFF2503 and GFF2504 overlap by 4 nucleotides GFF2504 and GFF2505 are separated by 30 nucleotides
GFF2502 - O-antigen acetylase, at 562,980 to 564,953
GFF2502
GFF2503 - DNA gyrase inhibitor YacG, at 564,965 to 565,174
GFF2503
GFF2504 - Cell division protein ZapD, at 565,171 to 565,926
GFF2504
GFF2505 - hypothetical protein, at 565,957 to 566,991
GFF2505
Position (kb) 564
565
566 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 563.973 kb on + strand, within GFF2502 at 563.973 kb on + strand, within GFF2502 at 563.973 kb on + strand, within GFF2502 at 563.974 kb on - strand, within GFF2502 at 563.974 kb on - strand, within GFF2502 at 563.974 kb on - strand, within GFF2502 at 564.053 kb on - strand, within GFF2502 at 564.150 kb on + strand, within GFF2502 at 564.150 kb on + strand, within GFF2502 at 564.150 kb on + strand, within GFF2502 at 564.150 kb on + strand, within GFF2502 at 564.150 kb on + strand, within GFF2502 at 564.150 kb on + strand, within GFF2502 at 564.150 kb on + strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.151 kb on - strand, within GFF2502 at 564.153 kb on + strand, within GFF2502 at 564.153 kb on + strand, within GFF2502 at 564.154 kb on - strand, within GFF2502 at 564.154 kb on - strand, within GFF2502 at 564.154 kb on - strand, within GFF2502 at 564.196 kb on - strand, within GFF2502 at 564.255 kb on + strand, within GFF2502 at 564.255 kb on + strand, within GFF2502 at 564.255 kb on + strand, within GFF2502 at 564.255 kb on + strand, within GFF2502 at 564.256 kb on - strand, within GFF2502 at 564.256 kb on - strand, within GFF2502 at 564.256 kb on - strand, within GFF2502 at 564.256 kb on - strand, within GFF2502 at 564.312 kb on + strand, within GFF2502 at 564.312 kb on + strand, within GFF2502 at 564.313 kb on - strand, within GFF2502 at 564.313 kb on - strand, within GFF2502 at 564.465 kb on + strand, within GFF2502 at 564.465 kb on + strand, within GFF2502 at 564.465 kb on + strand, within GFF2502 at 564.465 kb on + strand, within GFF2502 at 564.465 kb on + strand, within GFF2502 at 564.466 kb on - strand, within GFF2502 at 564.466 kb on - strand, within GFF2502 at 564.466 kb on - strand, within GFF2502 at 564.495 kb on + strand, within GFF2502 at 564.495 kb on + strand, within GFF2502 at 564.495 kb on + strand, within GFF2502 at 564.495 kb on + strand, within GFF2502 at 564.495 kb on + strand, within GFF2502 at 564.496 kb on - strand, within GFF2502 at 564.496 kb on - strand, within GFF2502 at 564.496 kb on - strand, within GFF2502 at 564.496 kb on - strand, within GFF2502 at 564.496 kb on - strand, within GFF2502 at 564.568 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.609 kb on + strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.610 kb on - strand, within GFF2502 at 564.858 kb on + strand at 564.858 kb on + strand at 564.858 kb on + strand at 564.859 kb on - strand at 564.888 kb on + strand at 564.888 kb on + strand at 564.888 kb on + strand at 564.888 kb on + strand at 564.889 kb on + strand at 564.889 kb on - strand at 564.889 kb on - strand at 564.889 kb on - strand at 564.909 kb on + strand at 564.909 kb on + strand at 564.909 kb on + strand at 564.909 kb on + strand at 564.909 kb on + strand at 564.910 kb on - strand at 564.910 kb on - strand at 564.910 kb on - strand at 564.910 kb on - strand at 564.951 kb on + strand at 564.951 kb on + strand at 564.951 kb on + strand at 564.951 kb on + strand at 564.952 kb on - strand at 564.963 kb on - strand at 564.963 kb on - strand at 564.963 kb on - strand at 564.963 kb on - strand at 564.963 kb on - strand at 564.963 kb on - strand at 564.966 kb on + strand at 564.967 kb on - strand at 565.090 kb on - strand, within GFF2503 at 565.090 kb on - strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.107 kb on + strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.108 kb on - strand, within GFF2503 at 565.388 kb on + strand, within GFF2504 at 565.388 kb on + strand, within GFF2504 at 565.389 kb on - strand, within GFF2504 at 565.389 kb on - strand, within GFF2504 at 565.427 kb on + strand, within GFF2504 at 565.427 kb on + strand, within GFF2504 at 565.427 kb on + strand, within GFF2504 at 565.427 kb on + strand, within GFF2504 at 565.428 kb on - strand, within GFF2504 at 565.514 kb on + strand, within GFF2504 at 565.514 kb on + strand, within GFF2504 at 565.514 kb on + strand, within GFF2504 at 565.514 kb on + strand, within GFF2504 at 565.514 kb on + strand, within GFF2504 at 565.514 kb on + strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.515 kb on - strand, within GFF2504 at 565.517 kb on + strand, within GFF2504 at 565.518 kb on - strand, within GFF2504 at 565.518 kb on - strand, within GFF2504 at 565.518 kb on - strand, within GFF2504 at 565.706 kb on + strand, within GFF2504 at 565.707 kb on - strand, within GFF2504 at 565.747 kb on + strand, within GFF2504 at 565.747 kb on + strand, within GFF2504 at 565.747 kb on + strand, within GFF2504 at 565.748 kb on - strand, within GFF2504 at 565.748 kb on - strand, within GFF2504 at 565.748 kb on - strand, within GFF2504 at 565.811 kb on + strand, within GFF2504 at 565.812 kb on - strand, within GFF2504 at 565.812 kb on - strand, within GFF2504 at 565.883 kb on + strand at 565.883 kb on + strand at 565.883 kb on + strand at 565.883 kb on + strand at 565.883 kb on + strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.884 kb on - strand at 565.910 kb on + strand at 565.910 kb on + strand at 565.910 kb on + strand at 565.911 kb on - strand at 565.916 kb on + strand at 565.917 kb on - strand at 565.917 kb on - strand at 565.931 kb on - strand at 566.010 kb on + strand at 566.010 kb on + strand at 566.010 kb on + strand at 566.011 kb on - strand at 566.031 kb on - strand at 566.031 kb on - strand at 566.124 kb on + strand, within GFF2505 at 566.125 kb on - strand, within GFF2505
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 563,973 + GFF2502 0.50 -1.1 563,973 + GFF2502 0.50 -0.3 563,973 + GFF2502 0.50 -3.4 563,974 - GFF2502 0.50 +0.8 563,974 - GFF2502 0.50 +2.8 563,974 - GFF2502 0.50 -2.4 564,053 - GFF2502 0.54 -0.7 564,150 + GFF2502 0.59 +0.3 564,150 + GFF2502 0.59 -0.1 564,150 + GFF2502 0.59 -1.3 564,150 + GFF2502 0.59 +0.0 564,150 + GFF2502 0.59 -3.1 564,150 + GFF2502 0.59 -0.7 564,150 + GFF2502 0.59 +1.9 564,151 - GFF2502 0.59 +0.8 564,151 - GFF2502 0.59 +0.7 564,151 - GFF2502 0.59 -2.4 564,151 - GFF2502 0.59 -2.6 564,151 - GFF2502 0.59 +1.2 564,151 - GFF2502 0.59 -0.1 564,151 - GFF2502 0.59 +1.6 564,151 - GFF2502 0.59 -3.0 564,153 + GFF2502 0.59 -0.4 564,153 + GFF2502 0.59 +1.0 564,154 - GFF2502 0.59 -0.1 564,154 - GFF2502 0.59 +0.3 564,154 - GFF2502 0.59 -3.3 564,196 - GFF2502 0.62 +1.0 564,255 + GFF2502 0.65 -0.7 564,255 + GFF2502 0.65 +0.9 564,255 + GFF2502 0.65 -0.8 564,255 + GFF2502 0.65 -1.9 564,256 - GFF2502 0.65 +2.5 564,256 - GFF2502 0.65 -1.7 564,256 - GFF2502 0.65 -2.4 564,256 - GFF2502 0.65 -2.1 564,312 + GFF2502 0.67 -0.1 564,312 + GFF2502 0.67 -2.4 564,313 - GFF2502 0.68 -1.8 564,313 - GFF2502 0.68 -1.3 564,465 + GFF2502 0.75 -2.7 564,465 + GFF2502 0.75 -0.1 564,465 + GFF2502 0.75 -3.1 564,465 + GFF2502 0.75 -2.1 564,465 + GFF2502 0.75 +0.3 564,466 - GFF2502 0.75 -2.3 564,466 - GFF2502 0.75 +2.8 564,466 - GFF2502 0.75 +2.8 564,495 + GFF2502 0.77 -1.1 564,495 + GFF2502 0.77 -1.6 564,495 + GFF2502 0.77 +0.1 564,495 + GFF2502 0.77 -0.2 564,495 + GFF2502 0.77 -0.7 564,496 - GFF2502 0.77 -1.7 564,496 - GFF2502 0.77 -1.4 564,496 - GFF2502 0.77 -2.4 564,496 - GFF2502 0.77 +1.6 564,496 - GFF2502 0.77 -1.3 564,568 + GFF2502 0.80 -3.2 564,609 + GFF2502 0.83 -0.1 564,609 + GFF2502 0.83 +0.9 564,609 + GFF2502 0.83 +1.7 564,609 + GFF2502 0.83 -0.7 564,609 + GFF2502 0.83 +0.3 564,609 + GFF2502 0.83 +0.9 564,609 + GFF2502 0.83 +0.3 564,609 + GFF2502 0.83 -1.8 564,610 - GFF2502 0.83 -1.7 564,610 - GFF2502 0.83 -1.3 564,610 - GFF2502 0.83 -2.9 564,610 - GFF2502 0.83 -0.1 564,610 - GFF2502 0.83 +1.1 564,610 - GFF2502 0.83 +0.9 564,610 - GFF2502 0.83 +0.4 564,610 - GFF2502 0.83 -1.1 564,858 + -1.8 564,858 + -0.1 564,858 + +0.9 564,859 - -3.1 564,888 + +0.2 564,888 + -0.7 564,888 + -2.5 564,888 + -0.4 564,889 + -0.5 564,889 - +2.3 564,889 - -3.2 564,889 - +1.2 564,909 + -0.4 564,909 + +1.6 564,909 + -0.4 564,909 + -1.9 564,909 + -1.6 564,910 - -2.2 564,910 - -4.4 564,910 - -1.3 564,910 - -0.1 564,951 + +1.0 564,951 + -0.9 564,951 + +0.4 564,951 + -2.6 564,952 - +0.2 564,963 - +1.1 564,963 - +2.8 564,963 - -0.1 564,963 - -0.5 564,963 - +0.7 564,963 - -0.4 564,966 + +2.3 564,967 - +0.2 565,090 - GFF2503 0.60 +0.3 565,090 - GFF2503 0.60 -3.0 565,107 + GFF2503 0.68 +0.4 565,107 + GFF2503 0.68 +0.3 565,107 + GFF2503 0.68 +0.3 565,107 + GFF2503 0.68 -1.3 565,107 + GFF2503 0.68 -2.5 565,107 + GFF2503 0.68 -2.4 565,107 + GFF2503 0.68 -2.9 565,107 + GFF2503 0.68 +1.9 565,107 + GFF2503 0.68 -0.0 565,108 - GFF2503 0.68 -0.7 565,108 - GFF2503 0.68 +0.9 565,108 - GFF2503 0.68 -1.3 565,108 - GFF2503 0.68 +1.0 565,108 - GFF2503 0.68 -0.1 565,108 - GFF2503 0.68 +0.8 565,108 - GFF2503 0.68 +0.4 565,108 - GFF2503 0.68 -2.5 565,108 - GFF2503 0.68 -1.8 565,388 + GFF2504 0.29 +1.4 565,388 + GFF2504 0.29 +0.2 565,389 - GFF2504 0.29 +0.6 565,389 - GFF2504 0.29 -1.4 565,427 + GFF2504 0.34 +0.7 565,427 + GFF2504 0.34 +0.4 565,427 + GFF2504 0.34 +1.5 565,427 + GFF2504 0.34 -0.4 565,428 - GFF2504 0.34 -2.2 565,514 + GFF2504 0.45 -0.1 565,514 + GFF2504 0.45 +1.1 565,514 + GFF2504 0.45 +0.3 565,514 + GFF2504 0.45 +0.2 565,514 + GFF2504 0.45 +1.5 565,514 + GFF2504 0.45 -1.1 565,515 - GFF2504 0.46 +1.2 565,515 - GFF2504 0.46 -1.6 565,515 - GFF2504 0.46 +1.2 565,515 - GFF2504 0.46 +0.9 565,515 - GFF2504 0.46 +1.0 565,515 - GFF2504 0.46 +1.2 565,515 - GFF2504 0.46 -0.7 565,515 - GFF2504 0.46 -0.1 565,515 - GFF2504 0.46 -0.1 565,517 + GFF2504 0.46 +1.7 565,518 - GFF2504 0.46 +0.8 565,518 - GFF2504 0.46 -3.1 565,518 - GFF2504 0.46 -3.2 565,706 + GFF2504 0.71 -0.7 565,707 - GFF2504 0.71 -1.8 565,747 + GFF2504 0.76 -2.2 565,747 + GFF2504 0.76 -0.0 565,747 + GFF2504 0.76 +0.3 565,748 - GFF2504 0.76 +0.8 565,748 - GFF2504 0.76 -1.6 565,748 - GFF2504 0.76 -2.4 565,811 + GFF2504 0.85 +0.9 565,812 - GFF2504 0.85 +0.4 565,812 - GFF2504 0.85 -1.1 565,883 + -1.9 565,883 + -2.9 565,883 + -3.1 565,883 + +0.3 565,883 + -0.1 565,884 - +1.3 565,884 - +1.1 565,884 - +1.0 565,884 - -1.5 565,884 - -0.4 565,884 - -0.3 565,884 - +0.4 565,884 - -1.1 565,884 - -0.5 565,884 - +0.1 565,910 + +2.7 565,910 + -0.3 565,910 + -2.3 565,911 - -0.2 565,916 + -2.0 565,917 - +1.5 565,917 - -0.7 565,931 - +2.1 566,010 + +0.2 566,010 + -2.4 566,010 + -2.4 566,011 - -0.1 566,031 - +2.0 566,031 - -0.0 566,124 + GFF2505 0.16 +1.9 566,125 - GFF2505 0.16 -1.6
Or see this region's nucleotide sequence