Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2155 and GFF2156 are separated by 49 nucleotides GFF2156 and GFF2157 are separated by 0 nucleotides GFF2157 and GFF2158 are separated by 8 nucleotides
GFF2155 - Signal transduction histidine kinase CheA, at 203,153 to 209,362
GFF2155
GFF2156 - Deoxyribodipyrimidine photolyase (EC 4.1.99.3), at 209,412 to 210,911
GFF2156
GFF2157 - UPF0301 protein YqgE, at 210,912 to 211,511
GFF2157
GFF2158 - Putative pre-16S rRNA nuclease YqgF, at 211,520 to 211,969
GFF2158
Position (kb) 209
210
211 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 208.550 kb on + strand, within GFF2155 at 208.550 kb on + strand, within GFF2155 at 208.551 kb on - strand, within GFF2155 at 208.595 kb on + strand, within GFF2155 at 208.596 kb on - strand, within GFF2155 at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.820 kb on + strand at 208.821 kb on - strand at 208.821 kb on - strand at 208.821 kb on - strand at 208.821 kb on - strand at 208.821 kb on - strand at 209.246 kb on + strand at 209.247 kb on - strand at 209.273 kb on + strand at 209.273 kb on + strand at 209.274 kb on - strand at 209.274 kb on - strand at 209.274 kb on - strand at 209.274 kb on - strand at 209.325 kb on - strand at 209.379 kb on + strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.380 kb on - strand at 209.500 kb on + strand at 209.500 kb on + strand at 209.500 kb on + strand at 209.500 kb on + strand at 209.501 kb on - strand at 209.501 kb on - strand at 209.603 kb on - strand, within GFF2156 at 209.603 kb on - strand, within GFF2156 at 209.671 kb on + strand, within GFF2156 at 209.672 kb on - strand, within GFF2156 at 209.672 kb on - strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.761 kb on + strand, within GFF2156 at 209.762 kb on - strand, within GFF2156 at 209.762 kb on - strand, within GFF2156 at 209.842 kb on + strand, within GFF2156 at 209.842 kb on + strand, within GFF2156 at 209.843 kb on - strand, within GFF2156 at 209.843 kb on - strand, within GFF2156 at 209.962 kb on + strand, within GFF2156 at 209.962 kb on + strand, within GFF2156 at 209.962 kb on + strand, within GFF2156 at 209.963 kb on - strand, within GFF2156 at 210.004 kb on + strand, within GFF2156 at 210.004 kb on + strand, within GFF2156 at 210.004 kb on + strand, within GFF2156 at 210.005 kb on - strand, within GFF2156 at 210.005 kb on - strand, within GFF2156 at 210.005 kb on - strand, within GFF2156 at 210.031 kb on + strand, within GFF2156 at 210.031 kb on + strand, within GFF2156 at 210.031 kb on + strand, within GFF2156 at 210.032 kb on - strand, within GFF2156 at 210.032 kb on - strand, within GFF2156 at 210.032 kb on - strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.160 kb on + strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.161 kb on - strand, within GFF2156 at 210.203 kb on - strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.264 kb on + strand, within GFF2156 at 210.265 kb on - strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.427 kb on + strand, within GFF2156 at 210.428 kb on - strand, within GFF2156 at 210.428 kb on - strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.445 kb on + strand, within GFF2156 at 210.446 kb on - strand, within GFF2156 at 210.446 kb on - strand, within GFF2156 at 210.446 kb on - strand, within GFF2156 at 210.502 kb on + strand, within GFF2156 at 210.502 kb on + strand, within GFF2156 at 210.502 kb on + strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.503 kb on - strand, within GFF2156 at 210.780 kb on + strand at 210.781 kb on - strand at 210.781 kb on - strand at 210.817 kb on + strand at 210.817 kb on + strand at 210.818 kb on - strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.877 kb on + strand at 210.878 kb on - strand at 210.878 kb on - strand at 210.878 kb on - strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.911 kb on + strand at 210.912 kb on - strand at 210.912 kb on - strand at 210.912 kb on - strand at 210.912 kb on - strand at 210.912 kb on - strand at 211.005 kb on + strand, within GFF2157 at 211.005 kb on + strand, within GFF2157 at 211.005 kb on + strand, within GFF2157 at 211.006 kb on - strand, within GFF2157 at 211.006 kb on - strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.224 kb on + strand, within GFF2157 at 211.225 kb on - strand, within GFF2157 at 211.225 kb on - strand, within GFF2157 at 211.225 kb on - strand, within GFF2157 at 211.335 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157 at 211.443 kb on + strand, within GFF2157
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 208,550 + GFF2155 0.87 +0.0 208,550 + GFF2155 0.87 -1.0 208,551 - GFF2155 0.87 +1.2 208,595 + GFF2155 0.88 -1.2 208,596 - GFF2155 0.88 -1.1 208,820 + +0.8 208,820 + +1.4 208,820 + -2.2 208,820 + +0.9 208,820 + +0.4 208,820 + +1.3 208,821 - -1.4 208,821 - +0.2 208,821 - +3.4 208,821 - -0.0 208,821 - +1.5 209,246 + -1.6 209,247 - -1.3 209,273 + +0.6 209,273 + +3.4 209,274 - -1.8 209,274 - -1.0 209,274 - -4.2 209,274 - -0.5 209,325 - -0.1 209,379 + -2.2 209,380 - -0.5 209,380 - -3.7 209,380 - -1.2 209,380 - +0.3 209,500 + -3.2 209,500 + +0.5 209,500 + -0.2 209,500 + +1.4 209,501 - +0.4 209,501 - -1.5 209,603 - GFF2156 0.13 -1.6 209,603 - GFF2156 0.13 -1.8 209,671 + GFF2156 0.17 -2.4 209,672 - GFF2156 0.17 +0.3 209,672 - GFF2156 0.17 +0.2 209,761 + GFF2156 0.23 -0.5 209,761 + GFF2156 0.23 +0.7 209,761 + GFF2156 0.23 +1.9 209,761 + GFF2156 0.23 -0.3 209,761 + GFF2156 0.23 -1.1 209,762 - GFF2156 0.23 -4.2 209,762 - GFF2156 0.23 -0.2 209,842 + GFF2156 0.29 -1.7 209,842 + GFF2156 0.29 -0.6 209,843 - GFF2156 0.29 +0.9 209,843 - GFF2156 0.29 +1.0 209,962 + GFF2156 0.37 +1.2 209,962 + GFF2156 0.37 +0.9 209,962 + GFF2156 0.37 -2.4 209,963 - GFF2156 0.37 -4.1 210,004 + GFF2156 0.39 -0.4 210,004 + GFF2156 0.39 -1.4 210,004 + GFF2156 0.39 -0.4 210,005 - GFF2156 0.40 -3.1 210,005 - GFF2156 0.40 -3.0 210,005 - GFF2156 0.40 +1.5 210,031 + GFF2156 0.41 -1.0 210,031 + GFF2156 0.41 -0.3 210,031 + GFF2156 0.41 -0.9 210,032 - GFF2156 0.41 +0.6 210,032 - GFF2156 0.41 -1.6 210,032 - GFF2156 0.41 -0.4 210,160 + GFF2156 0.50 +0.8 210,160 + GFF2156 0.50 -1.2 210,160 + GFF2156 0.50 +1.5 210,160 + GFF2156 0.50 +0.0 210,160 + GFF2156 0.50 -0.6 210,160 + GFF2156 0.50 -2.7 210,160 + GFF2156 0.50 -1.0 210,161 - GFF2156 0.50 +1.2 210,161 - GFF2156 0.50 -0.0 210,161 - GFF2156 0.50 +0.9 210,161 - GFF2156 0.50 -0.0 210,161 - GFF2156 0.50 +1.0 210,161 - GFF2156 0.50 -3.5 210,161 - GFF2156 0.50 -0.3 210,203 - GFF2156 0.53 -1.2 210,264 + GFF2156 0.57 +1.4 210,264 + GFF2156 0.57 -0.0 210,264 + GFF2156 0.57 -1.5 210,264 + GFF2156 0.57 +0.8 210,265 - GFF2156 0.57 -0.2 210,427 + GFF2156 0.68 -0.4 210,427 + GFF2156 0.68 +0.5 210,427 + GFF2156 0.68 +1.7 210,427 + GFF2156 0.68 -0.9 210,427 + GFF2156 0.68 -2.8 210,427 + GFF2156 0.68 -0.5 210,428 - GFF2156 0.68 -0.2 210,428 - GFF2156 0.68 -0.2 210,445 + GFF2156 0.69 +1.1 210,445 + GFF2156 0.69 +2.0 210,445 + GFF2156 0.69 -1.4 210,445 + GFF2156 0.69 -0.5 210,445 + GFF2156 0.69 +1.4 210,446 - GFF2156 0.69 +1.5 210,446 - GFF2156 0.69 -2.6 210,446 - GFF2156 0.69 -1.0 210,502 + GFF2156 0.73 +0.8 210,502 + GFF2156 0.73 +2.8 210,502 + GFF2156 0.73 -2.9 210,503 - GFF2156 0.73 -2.1 210,503 - GFF2156 0.73 -0.0 210,503 - GFF2156 0.73 -2.1 210,503 - GFF2156 0.73 -0.0 210,503 - GFF2156 0.73 -2.7 210,503 - GFF2156 0.73 -0.3 210,503 - GFF2156 0.73 +2.5 210,503 - GFF2156 0.73 +0.4 210,503 - GFF2156 0.73 +1.6 210,503 - GFF2156 0.73 +1.8 210,780 + -0.8 210,781 - +0.4 210,781 - -0.7 210,817 + -3.4 210,817 + +0.1 210,818 - +1.0 210,877 + +0.2 210,877 + +0.1 210,877 + +0.2 210,877 + -0.0 210,877 + -2.4 210,877 + +1.6 210,878 - -0.7 210,878 - -2.2 210,878 - -0.0 210,911 + -1.7 210,911 + +0.6 210,911 + -0.9 210,911 + -3.2 210,911 + -1.3 210,911 + -2.7 210,912 - -0.7 210,912 - -0.1 210,912 - +0.3 210,912 - -0.7 210,912 - -0.4 211,005 + GFF2157 0.15 -0.5 211,005 + GFF2157 0.15 -3.1 211,005 + GFF2157 0.15 +1.3 211,006 - GFF2157 0.16 -1.0 211,006 - GFF2157 0.16 -0.2 211,224 + GFF2157 0.52 -0.0 211,224 + GFF2157 0.52 -1.4 211,224 + GFF2157 0.52 -0.4 211,224 + GFF2157 0.52 +1.9 211,225 - GFF2157 0.52 -1.5 211,225 - GFF2157 0.52 -1.9 211,225 - GFF2157 0.52 -3.8 211,335 + GFF2157 0.70 +0.2 211,443 + GFF2157 0.89 -0.9 211,443 + GFF2157 0.89 -0.7 211,443 + GFF2157 0.89 -1.8 211,443 + GFF2157 0.89 -1.7
Or see this region's nucleotide sequence