Strain Fitness in Variovorax sp. SCN45 around GFF214

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF212 and GFF213 are separated by 63 nucleotidesGFF213 and GFF214 are separated by 99 nucleotidesGFF214 and GFF215 are separated by 15 nucleotidesGFF215 and GFF216 are separated by 13 nucleotides GFF212 - Ribosome association toxin RatA, at 238,028 to 238,474 GFF212 GFF213 - tmRNA-binding protein SmpB, at 238,538 to 239,014 GFF213 GFF214 - Putative transmembrane protein, at 239,114 to 239,494 GFF214 GFF215 - RNA polymerase sigma-54 factor RpoN, at 239,510 to 240,025 GFF215 GFF216 - Transmembrane regulator protein PrtR, at 240,039 to 240,863 GFF216 Position (kb) 239 240Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 238.144 kb on - strand, within GFF212at 238.395 kb on + strand, within GFF212at 238.395 kb on + strand, within GFF212at 238.396 kb on - strand, within GFF212at 238.396 kb on - strand, within GFF212at 238.396 kb on - strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.422 kb on + strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.423 kb on - strand, within GFF212at 238.440 kb on + strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.474 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.504 kb on + strandat 238.505 kb on - strandat 238.505 kb on - strandat 238.505 kb on - strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.558 kb on + strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.559 kb on - strandat 238.596 kb on - strand, within GFF213at 238.596 kb on - strand, within GFF213at 238.596 kb on - strand, within GFF213at 238.601 kb on + strand, within GFF213at 238.601 kb on + strand, within GFF213at 238.601 kb on + strand, within GFF213at 238.602 kb on - strand, within GFF213at 238.602 kb on - strand, within GFF213at 238.602 kb on - strand, within GFF213at 238.694 kb on + strand, within GFF213at 238.695 kb on - strand, within GFF213at 238.856 kb on + strand, within GFF213at 238.856 kb on + strand, within GFF213at 238.856 kb on + strand, within GFF213at 238.856 kb on + strand, within GFF213at 239.039 kb on - strandat 239.039 kb on - strandat 239.039 kb on - strandat 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.243 kb on + strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.244 kb on - strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.414 kb on + strand, within GFF214at 239.415 kb on - strand, within GFF214at 239.415 kb on - strand, within GFF214at 239.417 kb on + strand, within GFF214at 239.417 kb on + strand, within GFF214at 239.417 kb on + strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.418 kb on - strand, within GFF214at 239.556 kb on - strandat 239.888 kb on + strand, within GFF215at 239.888 kb on + strand, within GFF215at 239.889 kb on - strand, within GFF215at 239.889 kb on - strand, within GFF215at 239.889 kb on - strand, within GFF215at 239.889 kb on - strand, within GFF215at 240.459 kb on + strand, within GFF216at 240.459 kb on + strand, within GFF216at 240.459 kb on + strand, within GFF216at 240.460 kb on - strand, within GFF216at 240.460 kb on - strand, within GFF216

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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238,144 - GFF212 0.26 -1.9
238,395 + GFF212 0.82 +0.9
238,395 + GFF212 0.82 -0.7
238,396 - GFF212 0.82 +0.4
238,396 - GFF212 0.82 -1.4
238,396 - GFF212 0.82 -2.5
238,422 + GFF212 0.88 +0.4
238,422 + GFF212 0.88 -1.4
238,422 + GFF212 0.88 -1.2
238,422 + GFF212 0.88 -0.8
238,422 + GFF212 0.88 -0.3
238,422 + GFF212 0.88 -2.8
238,422 + GFF212 0.88 +0.2
238,422 + GFF212 0.88 -2.3
238,422 + GFF212 0.88 -0.6
238,422 + GFF212 0.88 -0.1
238,422 + GFF212 0.88 -1.1
238,422 + GFF212 0.88 +0.7
238,422 + GFF212 0.88 -2.1
238,422 + GFF212 0.88 -0.7
238,422 + GFF212 0.88 -2.0
238,422 + GFF212 0.88 +0.3
238,422 + GFF212 0.88 +0.4
238,422 + GFF212 0.88 -2.4
238,423 - GFF212 0.88 +0.0
238,423 - GFF212 0.88 +0.3
238,423 - GFF212 0.88 +0.3
238,423 - GFF212 0.88 -1.1
238,423 - GFF212 0.88 -1.9
238,423 - GFF212 0.88 -2.3
238,423 - GFF212 0.88 +0.2
238,423 - GFF212 0.88 -2.1
238,423 - GFF212 0.88 -1.4
238,423 - GFF212 0.88 -2.1
238,423 - GFF212 0.88 -2.3
238,423 - GFF212 0.88 -1.5
238,423 - GFF212 0.88 -1.9
238,423 - GFF212 0.88 +0.8
238,423 - GFF212 0.88 +0.2
238,423 - GFF212 0.88 +2.2
238,423 - GFF212 0.88 +1.1
238,423 - GFF212 0.88 -0.9
238,423 - GFF212 0.88 -1.4
238,440 + +1.1
238,474 + -2.5
238,474 + +0.5
238,474 + +2.3
238,504 + +2.5
238,504 + +1.4
238,504 + -2.9
238,504 + -1.7
238,504 + +0.3
238,504 + +0.7
238,505 - -1.7
238,505 - -0.9
238,505 - -0.9
238,558 + -2.7
238,558 + +0.4
238,558 + -0.9
238,558 + -1.7
238,558 + -0.9
238,558 + -1.4
238,558 + -2.9
238,558 + -0.0
238,558 + +2.0
238,559 - +2.4
238,559 - -2.6
238,559 - +0.4
238,559 - -3.3
238,559 - -3.0
238,559 - -2.6
238,559 - -2.1
238,559 - -2.6
238,596 - GFF213 0.12 -2.6
238,596 - GFF213 0.12 +0.4
238,596 - GFF213 0.12 -0.9
238,601 + GFF213 0.13 -0.6
238,601 + GFF213 0.13 -1.6
238,601 + GFF213 0.13 -2.8
238,602 - GFF213 0.13 -1.1
238,602 - GFF213 0.13 -0.9
238,602 - GFF213 0.13 -0.1
238,694 + GFF213 0.33 +0.4
238,695 - GFF213 0.33 -3.0
238,856 + GFF213 0.67 -2.0
238,856 + GFF213 0.67 -0.9
238,856 + GFF213 0.67 -1.4
238,856 + GFF213 0.67 -2.8
239,039 - +0.2
239,039 - -0.9
239,039 - +0.1
239,243 + GFF214 0.34 +2.0
239,243 + GFF214 0.34 -5.6
239,243 + GFF214 0.34 -0.0
239,243 + GFF214 0.34 -1.7
239,243 + GFF214 0.34 -0.9
239,244 - GFF214 0.34 +0.4
239,244 - GFF214 0.34 -2.1
239,244 - GFF214 0.34 +0.4
239,244 - GFF214 0.34 +1.4
239,244 - GFF214 0.34 +2.7
239,414 + GFF214 0.79 +0.1
239,414 + GFF214 0.79 -1.7
239,414 + GFF214 0.79 -0.2
239,414 + GFF214 0.79 +3.3
239,415 - GFF214 0.79 +0.5
239,415 - GFF214 0.79 -2.1
239,417 + GFF214 0.80 +1.0
239,417 + GFF214 0.80 -1.1
239,417 + GFF214 0.80 +0.4
239,418 - GFF214 0.80 +2.8
239,418 - GFF214 0.80 +0.3
239,418 - GFF214 0.80 +0.4
239,418 - GFF214 0.80 +2.0
239,418 - GFF214 0.80 -2.0
239,418 - GFF214 0.80 +0.9
239,556 - -2.3
239,888 + GFF215 0.73 -0.8
239,888 + GFF215 0.73 +0.7
239,889 - GFF215 0.73 -0.8
239,889 - GFF215 0.73 -1.6
239,889 - GFF215 0.73 -0.1
239,889 - GFF215 0.73 +0.9
240,459 + GFF216 0.51 -4.4
240,459 + GFF216 0.51 +0.1
240,459 + GFF216 0.51 -1.4
240,460 - GFF216 0.51 -2.0
240,460 - GFF216 0.51 +0.5

Or see this region's nucleotide sequence