Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2127 and GFF2128 are separated by 30 nucleotides GFF2128 and GFF2129 are separated by 96 nucleotides GFF2129 and GFF2130 are separated by 61 nucleotides GFF2130 and GFF2131 overlap by 4 nucleotides
GFF2127 - Type II/IV secretion system secretin RcpA/CpaC, associated with Flp pilus assembly, at 176,335 to 177,612
GFF2127
GFF2128 - Enoyl-CoA hydratase (EC 4.2.1.17), at 177,643 to 178,422
GFF2128
GFF2129 - small multidrug resistance family (SMR) protein, at 178,519 to 178,854
GFF2129
GFF2130 - hypothetical protein, at 178,916 to 179,506
GFF2130
GFF2131 - Putative protease, at 179,503 to 181,353
GFF2131
Position (kb) 178
179 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 177.821 kb on + strand, within GFF2128 at 178.172 kb on + strand, within GFF2128 at 178.172 kb on + strand, within GFF2128 at 178.172 kb on + strand, within GFF2128 at 178.172 kb on + strand, within GFF2128 at 178.172 kb on + strand, within GFF2128 at 178.172 kb on + strand, within GFF2128 at 178.172 kb on + strand, within GFF2128 at 178.184 kb on + strand, within GFF2128 at 178.184 kb on + strand, within GFF2128 at 178.184 kb on + strand, within GFF2128 at 178.184 kb on + strand, within GFF2128 at 178.184 kb on + strand, within GFF2128 at 178.185 kb on - strand, within GFF2128 at 178.185 kb on - strand, within GFF2128 at 178.185 kb on - strand, within GFF2128 at 178.185 kb on - strand, within GFF2128 at 178.185 kb on - strand, within GFF2128 at 178.202 kb on + strand, within GFF2128 at 178.202 kb on + strand, within GFF2128 at 178.202 kb on + strand, within GFF2128 at 178.202 kb on + strand, within GFF2128 at 178.202 kb on + strand, within GFF2128 at 178.203 kb on - strand, within GFF2128 at 178.203 kb on - strand, within GFF2128 at 178.203 kb on - strand, within GFF2128 at 178.203 kb on - strand, within GFF2128 at 178.415 kb on + strand at 178.415 kb on + strand at 178.416 kb on - strand at 178.461 kb on - strand at 178.461 kb on - strand at 178.462 kb on + strand at 178.462 kb on + strand at 178.462 kb on + strand at 178.463 kb on - strand at 178.506 kb on + strand at 178.507 kb on - strand at 178.507 kb on - strand at 178.507 kb on - strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.531 kb on + strand at 178.532 kb on - strand at 178.537 kb on + strand at 178.537 kb on + strand at 178.538 kb on - strand at 178.538 kb on - strand at 178.538 kb on - strand at 178.538 kb on - strand at 178.538 kb on - strand at 178.639 kb on + strand, within GFF2129 at 178.640 kb on - strand, within GFF2129 at 178.640 kb on - strand, within GFF2129 at 178.699 kb on + strand, within GFF2129 at 178.699 kb on + strand, within GFF2129 at 178.946 kb on + strand at 178.946 kb on + strand at 178.946 kb on + strand at 178.947 kb on - strand at 178.947 kb on - strand at 178.947 kb on - strand at 178.947 kb on - strand at 178.947 kb on - strand at 179.282 kb on + strand, within GFF2130 at 179.282 kb on + strand, within GFF2130 at 179.283 kb on - strand, within GFF2130 at 179.283 kb on - strand, within GFF2130 at 179.283 kb on - strand, within GFF2130 at 179.283 kb on - strand, within GFF2130 at 179.283 kb on - strand, within GFF2130 at 179.283 kb on - strand, within GFF2130 at 179.396 kb on + strand, within GFF2130 at 179.397 kb on - strand, within GFF2130 at 179.504 kb on + strand at 179.505 kb on - strand at 179.648 kb on + strand at 179.648 kb on + strand at 179.648 kb on + strand at 179.649 kb on - strand at 179.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 177,821 + GFF2128 0.23 +1.0 178,172 + GFF2128 0.68 -2.7 178,172 + GFF2128 0.68 -1.4 178,172 + GFF2128 0.68 -0.0 178,172 + GFF2128 0.68 -5.4 178,172 + GFF2128 0.68 -0.8 178,172 + GFF2128 0.68 -2.9 178,172 + GFF2128 0.68 -4.4 178,184 + GFF2128 0.69 -2.6 178,184 + GFF2128 0.69 -3.5 178,184 + GFF2128 0.69 -0.0 178,184 + GFF2128 0.69 +1.0 178,184 + GFF2128 0.69 -3.7 178,185 - GFF2128 0.69 -3.1 178,185 - GFF2128 0.69 -1.8 178,185 - GFF2128 0.69 -3.4 178,185 - GFF2128 0.69 -2.5 178,185 - GFF2128 0.69 -0.6 178,202 + GFF2128 0.72 -3.8 178,202 + GFF2128 0.72 -4.3 178,202 + GFF2128 0.72 -1.5 178,202 + GFF2128 0.72 -4.6 178,202 + GFF2128 0.72 -3.5 178,203 - GFF2128 0.72 -3.8 178,203 - GFF2128 0.72 -3.8 178,203 - GFF2128 0.72 -5.2 178,203 - GFF2128 0.72 -3.4 178,415 + -1.2 178,415 + -3.0 178,416 - -3.2 178,461 - -2.0 178,461 - -0.6 178,462 + -1.3 178,462 + +2.7 178,462 + -0.4 178,463 - +2.7 178,506 + -0.6 178,507 - -0.2 178,507 - +0.0 178,507 - +0.9 178,531 + -2.9 178,531 + +3.3 178,531 + -3.1 178,531 + +0.6 178,531 + +1.0 178,531 + -1.0 178,531 + +2.2 178,531 + -0.8 178,531 + +2.1 178,532 - -2.9 178,537 + +0.4 178,537 + -0.4 178,538 - -3.9 178,538 - -1.0 178,538 - -1.9 178,538 - -1.9 178,538 - +0.4 178,639 + GFF2129 0.36 -1.8 178,640 - GFF2129 0.36 -1.0 178,640 - GFF2129 0.36 -2.7 178,699 + GFF2129 0.54 +0.2 178,699 + GFF2129 0.54 -3.2 178,946 + -3.4 178,946 + -0.4 178,946 + -1.2 178,947 - -2.5 178,947 - +0.6 178,947 - +0.7 178,947 - +0.6 178,947 - -1.9 179,282 + GFF2130 0.62 -1.2 179,282 + GFF2130 0.62 +1.0 179,283 - GFF2130 0.62 -2.5 179,283 - GFF2130 0.62 -1.4 179,283 - GFF2130 0.62 -2.6 179,283 - GFF2130 0.62 +0.4 179,283 - GFF2130 0.62 +1.7 179,283 - GFF2130 0.62 -1.2 179,396 + GFF2130 0.81 -0.0 179,397 - GFF2130 0.81 -0.4 179,504 + -0.2 179,505 - -2.6 179,648 + +2.6 179,648 + +0.2 179,648 + -1.5 179,649 - -0.3 179,649 - -2.4
Or see this region's nucleotide sequence