Strain Fitness in Variovorax sp. SCN45 around GFF2082

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2081 and GFF2082 are separated by 273 nucleotidesGFF2082 and GFF2083 are separated by 9 nucleotidesGFF2083 and GFF2084 overlap by 4 nucleotides GFF2081 - no description, at 129,381 to 130,445 GFF2081 GFF2082 - transcriptional regulator, Crp/Fnr family, at 130,719 to 131,351 GFF2082 GFF2083 - putative periplasmic membrane protein, at 131,361 to 131,963 GFF2083 GFF2084 - Phosphatidate cytidylyltransferase (EC 2.7.7.41), at 131,960 to 132,913 GFF2084 Position (kb) 130 131 132Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 129.736 kb on + strand, within GFF2081at 129.757 kb on + strand, within GFF2081at 129.757 kb on + strand, within GFF2081at 129.758 kb on - strand, within GFF2081at 129.823 kb on + strand, within GFF2081at 129.824 kb on - strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.832 kb on + strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.833 kb on - strand, within GFF2081at 129.835 kb on + strand, within GFF2081at 129.836 kb on - strand, within GFF2081at 129.868 kb on + strand, within GFF2081at 129.869 kb on - strand, within GFF2081at 129.916 kb on + strand, within GFF2081at 130.061 kb on - strand, within GFF2081at 130.084 kb on + strand, within GFF2081at 130.084 kb on + strand, within GFF2081at 130.085 kb on - strand, within GFF2081at 130.085 kb on - strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.099 kb on + strand, within GFF2081at 130.100 kb on - strand, within GFF2081at 130.100 kb on - strand, within GFF2081at 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.348 kb on + strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.349 kb on - strandat 130.367 kb on - strandat 130.367 kb on - strandat 130.367 kb on - strandat 130.367 kb on - strandat 130.405 kb on + strandat 130.524 kb on + strandat 130.529 kb on + strandat 130.529 kb on + strandat 130.743 kb on + strandat 130.743 kb on + strandat 130.743 kb on + strandat 130.743 kb on + strandat 130.851 kb on + strand, within GFF2082at 130.851 kb on + strand, within GFF2082at 130.852 kb on - strand, within GFF2082at 130.852 kb on - strand, within GFF2082at 130.852 kb on - strand, within GFF2082at 130.924 kb on - strand, within GFF2082at 130.930 kb on - strand, within GFF2082at 131.133 kb on + strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.134 kb on - strand, within GFF2082at 131.293 kb on - strandat 131.293 kb on - strandat 131.293 kb on - strandat 131.293 kb on - strandat 131.572 kb on + strand, within GFF2083at 131.728 kb on + strand, within GFF2083at 131.728 kb on + strand, within GFF2083at 131.728 kb on + strand, within GFF2083at 131.729 kb on - strand, within GFF2083at 131.729 kb on - strand, within GFF2083at 131.729 kb on - strand, within GFF2083at 131.976 kb on + strandat 131.994 kb on + strandat 131.994 kb on + strandat 131.995 kb on - strandat 132.186 kb on + strand, within GFF2084at 132.187 kb on - strand, within GFF2084at 132.303 kb on + strand, within GFF2084at 132.303 kb on + strand, within GFF2084at 132.303 kb on + strand, within GFF2084at 132.303 kb on + strand, within GFF2084at 132.304 kb on - strand, within GFF2084at 132.304 kb on - strand, within GFF2084at 132.304 kb on - strand, within GFF2084at 132.304 kb on - strand, within GFF2084at 132.304 kb on - strand, within GFF2084

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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129,736 + GFF2081 0.33 -1.0
129,757 + GFF2081 0.35 +0.7
129,757 + GFF2081 0.35 -1.6
129,758 - GFF2081 0.35 -1.7
129,823 + GFF2081 0.42 +0.3
129,824 - GFF2081 0.42 +0.5
129,832 + GFF2081 0.42 +1.0
129,832 + GFF2081 0.42 +0.6
129,832 + GFF2081 0.42 +0.4
129,832 + GFF2081 0.42 -1.9
129,832 + GFF2081 0.42 +0.6
129,833 - GFF2081 0.42 -0.0
129,833 - GFF2081 0.42 +0.1
129,833 - GFF2081 0.42 +0.7
129,833 - GFF2081 0.42 +1.6
129,833 - GFF2081 0.42 -0.0
129,833 - GFF2081 0.42 -0.7
129,835 + GFF2081 0.43 -1.0
129,836 - GFF2081 0.43 -0.1
129,868 + GFF2081 0.46 +1.7
129,869 - GFF2081 0.46 -1.6
129,916 + GFF2081 0.50 +0.0
130,061 - GFF2081 0.64 +0.1
130,084 + GFF2081 0.66 +1.9
130,084 + GFF2081 0.66 -2.0
130,085 - GFF2081 0.66 -0.8
130,085 - GFF2081 0.66 -0.3
130,099 + GFF2081 0.67 +1.2
130,099 + GFF2081 0.67 -0.3
130,099 + GFF2081 0.67 +0.3
130,100 - GFF2081 0.68 -1.4
130,100 - GFF2081 0.68 +1.0
130,348 + -2.5
130,348 + -0.3
130,348 + +0.4
130,348 + -0.1
130,348 + +0.3
130,348 + +1.6
130,348 + -1.5
130,348 + -2.4
130,349 - +2.0
130,349 - -1.6
130,349 - +0.2
130,349 - +2.7
130,349 - -0.3
130,367 - +1.1
130,367 - -3.7
130,367 - -1.2
130,367 - +1.1
130,405 + -0.0
130,524 + -2.0
130,529 + -3.8
130,529 + -0.5
130,743 + -2.0
130,743 + -1.6
130,743 + -0.3
130,743 + -2.2
130,851 + GFF2082 0.21 -0.1
130,851 + GFF2082 0.21 -0.1
130,852 - GFF2082 0.21 -2.8
130,852 - GFF2082 0.21 +0.3
130,852 - GFF2082 0.21 -0.3
130,924 - GFF2082 0.32 -1.0
130,930 - GFF2082 0.33 +1.3
131,133 + GFF2082 0.65 -0.0
131,134 - GFF2082 0.66 -0.6
131,134 - GFF2082 0.66 +0.8
131,134 - GFF2082 0.66 +0.9
131,134 - GFF2082 0.66 +0.2
131,293 - -1.8
131,293 - -0.7
131,293 - -1.7
131,293 - +1.4
131,572 + GFF2083 0.35 -0.8
131,728 + GFF2083 0.61 -0.9
131,728 + GFF2083 0.61 -1.8
131,728 + GFF2083 0.61 +1.3
131,729 - GFF2083 0.61 +0.9
131,729 - GFF2083 0.61 -0.3
131,729 - GFF2083 0.61 -3.1
131,976 + +1.1
131,994 + -0.0
131,994 + -1.7
131,995 - -4.1
132,186 + GFF2084 0.24 +0.5
132,187 - GFF2084 0.24 +1.4
132,303 + GFF2084 0.36 +0.1
132,303 + GFF2084 0.36 -1.2
132,303 + GFF2084 0.36 +1.0
132,303 + GFF2084 0.36 -1.5
132,304 - GFF2084 0.36 -3.1
132,304 - GFF2084 0.36 -1.7
132,304 - GFF2084 0.36 +2.3
132,304 - GFF2084 0.36 -1.5
132,304 - GFF2084 0.36 +2.8

Or see this region's nucleotide sequence