Strain Fitness in Variovorax sp. SCN45 around GFF2072

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
117,801	-				-1.1
117,811	+				-0.0
117,811	+				-2.2
117,811	+				-1.8
117,811	+				+2.1
117,811	+				-0.8
117,812	-				+0.9
117,812	-				-0.3
117,812	-				-1.5
117,812	-				-0.1
117,842	+				-0.6
117,842	+				-4.1
117,842	+				-2.4
117,843	-				-0.8
117,843	-				-1.8
118,116	+		GFF2070	0.71	+0.8
118,116	+		GFF2070	0.71	-2.1
118,117	-		GFF2070	0.71	+0.1
118,122	+		GFF2070	0.72	-3.1
118,122	+		GFF2070	0.72	+2.3
118,122	+		GFF2070	0.72	-0.6
118,122	+		GFF2070	0.72	-0.1
118,122	+		GFF2070	0.72	-1.3
118,122	+		GFF2070	0.72	-0.6
118,123	-		GFF2070	0.73	-0.1
118,123	-		GFF2070	0.73	-0.6
118,123	-		GFF2070	0.73	-2.3
118,123	-		GFF2070	0.73	-0.6
118,123	-		GFF2070	0.73	-0.5
118,123	-		GFF2070	0.73	-0.0
118,242	+				-0.0
118,242	+				-2.4
118,242	+				-0.2
118,243	-				-0.5
118,243	-				-0.9
118,762	+				-2.5
118,762	+				-1.9
118,762	+				-1.1
118,762	+				-1.6
118,762	+				-2.1
118,763	-				-0.6
118,763	-				+0.8
118,763	-				-0.3
118,763	-				-0.7
118,763	-				-2.1
118,763	-				-0.7
118,763	-				+0.3
118,763	-				-1.3
119,095	+		GFF2072	0.38	-2.6
119,095	+		GFF2072	0.38	+0.3
119,096	-		GFF2072	0.38	-4.0
119,096	-		GFF2072	0.38	-1.0
119,110	+		GFF2072	0.40	-0.4
119,110	+		GFF2072	0.40	+0.8
119,110	+		GFF2072	0.40	+0.9
119,111	-		GFF2072	0.40	-3.8
119,122	+		GFF2072	0.41	-1.7
119,122	+		GFF2072	0.41	-1.0
119,122	+		GFF2072	0.41	+0.7
119,123	-		GFF2072	0.41	-0.5
119,123	-		GFF2072	0.41	-0.6
119,272	+		GFF2072	0.57	+0.3
119,272	+		GFF2072	0.57	-1.0
119,272	+		GFF2072	0.57	-1.8
119,272	+		GFF2072	0.57	-2.0
119,273	-		GFF2072	0.57	-1.6
119,273	-		GFF2072	0.57	-1.0
119,273	-		GFF2072	0.57	-3.4
119,273	-		GFF2072	0.57	-0.7
119,338	+		GFF2072	0.64	-1.5
119,338	+		GFF2072	0.64	-0.5
119,338	+		GFF2072	0.64	-0.4
119,339	-		GFF2072	0.64	-0.2
119,339	-		GFF2072	0.64	-1.6
119,485	+		GFF2072	0.79	-0.3
119,485	+		GFF2072	0.79	-1.9
119,486	-		GFF2072	0.79	+0.2
119,486	-		GFF2072	0.79	+0.7
119,486	-		GFF2072	0.79	-0.3
119,486	-		GFF2072	0.79	+0.3
119,709	+				-2.0
119,780	+		GFF2073	0.13	-1.2
119,780	+		GFF2073	0.13	+0.4
119,781	-		GFF2073	0.13	-1.7
119,810	+		GFF2073	0.18	-2.3
119,810	+		GFF2073	0.18	-0.0
119,810	+		GFF2073	0.18	+1.3
119,810	+		GFF2073	0.18	-0.0
119,811	-		GFF2073	0.18	-2.8
119,811	-		GFF2073	0.18	-1.5
119,811	-		GFF2073	0.18	+2.0
119,811	-		GFF2073	0.18	-2.3
119,811	-		GFF2073	0.18	-1.0
119,811	-		GFF2073	0.18	+1.0
120,128	-		GFF2073	0.74	-0.8
120,388	+		GFF2074	0.13	-1.1
120,409	+		GFF2074	0.15	-1.0
120,410	-		GFF2074	0.15	-0.1
120,410	-		GFF2074	0.15	-0.1