Strain Fitness in Variovorax sp. SCN45 around GFF2055

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2053 and GFF2054 are separated by 10 nucleotidesGFF2054 and GFF2055 are separated by 10 nucleotidesGFF2055 and GFF2056 overlap by 4 nucleotidesGFF2056 and GFF2057 are separated by 30 nucleotides GFF2053 - Adenosylhomocysteinase (EC 3.3.1.1), at 101,814 to 103,253 GFF2053 GFF2054 - RNA binding methyltransferase FtsJ like, at 103,264 to 104,040 GFF2054 GFF2055 - 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20), at 104,051 to 104,875 GFF2055 GFF2056 - Septum-associated rare lipoprotein A, at 104,872 to 105,582 GFF2056 GFF2057 - 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266), at 105,613 to 106,578 GFF2057 Position (kb) 104 105Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 103.105 kb on - strand, within GFF2053at 103.243 kb on - strandat 103.248 kb on + strandat 103.249 kb on - strandat 103.453 kb on + strand, within GFF2054at 103.453 kb on + strand, within GFF2054at 103.453 kb on + strand, within GFF2054at 103.453 kb on + strand, within GFF2054at 103.454 kb on - strand, within GFF2054at 103.454 kb on - strand, within GFF2054at 103.454 kb on - strand, within GFF2054at 103.756 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.891 kb on + strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.892 kb on - strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.915 kb on + strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 103.916 kb on - strand, within GFF2054at 104.038 kb on + strandat 104.038 kb on + strandat 104.038 kb on + strandat 104.039 kb on - strandat 104.039 kb on - strandat 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.135 kb on + strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.136 kb on - strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.168 kb on + strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.169 kb on - strand, within GFF2055at 104.385 kb on - strand, within GFF2055at 104.549 kb on + strand, within GFF2055at 104.550 kb on - strand, within GFF2055at 104.550 kb on - strand, within GFF2055at 104.550 kb on - strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.570 kb on + strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.571 kb on - strand, within GFF2055at 104.822 kb on + strandat 104.822 kb on + strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 104.823 kb on - strandat 105.080 kb on - strand, within GFF2056at 105.178 kb on + strand, within GFF2056at 105.179 kb on - strand, within GFF2056at 105.179 kb on - strand, within GFF2056at 105.341 kb on - strand, within GFF2056at 105.341 kb on - strand, within GFF2056at 105.580 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.580 kb on + strandat 105.581 kb on - strandat 105.581 kb on - strandat 105.581 kb on - strandat 105.710 kb on + strand, within GFF2057at 105.710 kb on + strand, within GFF2057at 105.710 kb on + strand, within GFF2057at 105.711 kb on - strand, within GFF2057at 105.711 kb on - strand, within GFF2057

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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103,105 - GFF2053 0.90 +2.0
103,243 - +2.0
103,248 + -1.0
103,249 - +1.0
103,453 + GFF2054 0.24 -1.9
103,453 + GFF2054 0.24 -1.6
103,453 + GFF2054 0.24 +1.3
103,453 + GFF2054 0.24 +2.0
103,454 - GFF2054 0.24 -0.6
103,454 - GFF2054 0.24 -2.2
103,454 - GFF2054 0.24 -0.0
103,756 + GFF2054 0.63 -1.3
103,891 + GFF2054 0.81 -0.4
103,891 + GFF2054 0.81 -1.3
103,891 + GFF2054 0.81 +0.6
103,891 + GFF2054 0.81 +1.7
103,891 + GFF2054 0.81 -0.6
103,891 + GFF2054 0.81 -2.6
103,891 + GFF2054 0.81 -0.7
103,891 + GFF2054 0.81 -1.8
103,891 + GFF2054 0.81 +1.1
103,891 + GFF2054 0.81 +0.7
103,891 + GFF2054 0.81 +1.1
103,891 + GFF2054 0.81 -1.0
103,891 + GFF2054 0.81 -1.3
103,891 + GFF2054 0.81 -1.1
103,891 + GFF2054 0.81 -1.5
103,891 + GFF2054 0.81 +1.4
103,891 + GFF2054 0.81 -1.0
103,891 + GFF2054 0.81 -2.2
103,891 + GFF2054 0.81 -2.8
103,891 + GFF2054 0.81 -2.5
103,891 + GFF2054 0.81 -1.3
103,891 + GFF2054 0.81 -0.6
103,891 + GFF2054 0.81 -2.7
103,891 + GFF2054 0.81 +1.6
103,892 - GFF2054 0.81 +0.4
103,892 - GFF2054 0.81 +0.4
103,892 - GFF2054 0.81 -0.3
103,892 - GFF2054 0.81 -1.5
103,892 - GFF2054 0.81 -1.9
103,892 - GFF2054 0.81 -2.5
103,892 - GFF2054 0.81 -1.5
103,892 - GFF2054 0.81 -0.3
103,892 - GFF2054 0.81 +0.3
103,892 - GFF2054 0.81 +1.3
103,892 - GFF2054 0.81 +0.4
103,892 - GFF2054 0.81 -2.1
103,892 - GFF2054 0.81 +1.1
103,892 - GFF2054 0.81 +1.0
103,892 - GFF2054 0.81 -1.3
103,892 - GFF2054 0.81 +1.4
103,892 - GFF2054 0.81 -0.5
103,892 - GFF2054 0.81 -1.9
103,892 - GFF2054 0.81 -0.6
103,892 - GFF2054 0.81 -2.2
103,892 - GFF2054 0.81 -2.9
103,892 - GFF2054 0.81 -0.8
103,892 - GFF2054 0.81 -2.7
103,892 - GFF2054 0.81 -3.5
103,892 - GFF2054 0.81 -2.9
103,892 - GFF2054 0.81 -2.0
103,892 - GFF2054 0.81 -0.8
103,892 - GFF2054 0.81 +0.5
103,892 - GFF2054 0.81 +0.1
103,892 - GFF2054 0.81 -0.9
103,892 - GFF2054 0.81 -1.6
103,915 + GFF2054 0.84 +0.5
103,915 + GFF2054 0.84 -1.5
103,915 + GFF2054 0.84 +2.9
103,916 - GFF2054 0.84 -2.0
103,916 - GFF2054 0.84 +1.5
103,916 - GFF2054 0.84 -1.3
103,916 - GFF2054 0.84 -0.0
104,038 + +1.1
104,038 + +0.0
104,038 + -0.6
104,039 - -1.7
104,039 - +1.3
104,135 + GFF2055 0.10 -4.9
104,135 + GFF2055 0.10 +0.4
104,135 + GFF2055 0.10 +2.0
104,135 + GFF2055 0.10 -0.0
104,135 + GFF2055 0.10 -3.6
104,135 + GFF2055 0.10 -2.0
104,135 + GFF2055 0.10 -1.9
104,135 + GFF2055 0.10 -2.7
104,135 + GFF2055 0.10 -3.1
104,135 + GFF2055 0.10 -3.7
104,135 + GFF2055 0.10 -2.9
104,135 + GFF2055 0.10 -4.1
104,135 + GFF2055 0.10 -3.1
104,136 - GFF2055 0.10 -0.3
104,136 - GFF2055 0.10 -2.8
104,136 - GFF2055 0.10 -3.3
104,136 - GFF2055 0.10 -1.4
104,136 - GFF2055 0.10 -1.1
104,136 - GFF2055 0.10 -1.2
104,168 + GFF2055 0.14 -3.7
104,168 + GFF2055 0.14 -2.6
104,168 + GFF2055 0.14 -0.0
104,168 + GFF2055 0.14 -2.1
104,169 - GFF2055 0.14 +2.3
104,169 - GFF2055 0.14 -3.1
104,169 - GFF2055 0.14 -2.9
104,169 - GFF2055 0.14 -1.2
104,169 - GFF2055 0.14 -0.0
104,385 - GFF2055 0.40 -0.8
104,549 + GFF2055 0.60 -4.5
104,550 - GFF2055 0.60 -2.2
104,550 - GFF2055 0.60 -0.6
104,550 - GFF2055 0.60 -1.8
104,570 + GFF2055 0.63 +0.4
104,570 + GFF2055 0.63 -3.4
104,570 + GFF2055 0.63 -0.3
104,570 + GFF2055 0.63 -3.2
104,570 + GFF2055 0.63 -3.2
104,571 - GFF2055 0.63 +2.0
104,571 - GFF2055 0.63 -1.6
104,571 - GFF2055 0.63 -1.0
104,571 - GFF2055 0.63 -4.8
104,571 - GFF2055 0.63 +1.0
104,571 - GFF2055 0.63 -3.4
104,571 - GFF2055 0.63 -2.5
104,822 + -2.9
104,822 + -0.9
104,823 - -0.8
104,823 - -2.5
104,823 - +0.4
104,823 - -3.3
104,823 - -1.8
104,823 - -0.8
104,823 - -2.3
104,823 - -2.4
105,080 - GFF2056 0.29 -0.4
105,178 + GFF2056 0.43 +1.3
105,179 - GFF2056 0.43 +2.1
105,179 - GFF2056 0.43 +1.0
105,341 - GFF2056 0.66 +1.9
105,341 - GFF2056 0.66 +1.3
105,580 + -1.2
105,580 + -1.5
105,580 + +1.7
105,580 + -2.4
105,581 - +1.0
105,581 - +0.4
105,581 - +1.0
105,710 + GFF2057 0.10 -1.7
105,710 + GFF2057 0.10 +1.0
105,710 + GFF2057 0.10 -0.6
105,711 - GFF2057 0.10 +0.2
105,711 - GFF2057 0.10 -1.8

Or see this region's nucleotide sequence