Strain Fitness in Variovorax sp. SCN45 around GFF2041

Experiment: Community=guar; Passage=4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Community=guar; Passage=4
88,719	+		GFF2040	0.39	+0.8
88,719	+		GFF2040	0.39	-1.9
89,318	+		GFF2040	0.87	-3.1
89,319	-		GFF2040	0.87	-2.8
89,319	-		GFF2040	0.87	-1.6
89,319	-		GFF2040	0.87	+0.4
89,319	-		GFF2040	0.87	+0.9
89,319	-		GFF2040	0.87	-0.7
89,396	+				-0.7
89,397	-				-0.6
89,397	-				-1.2
89,397	-				+1.0
89,397	-				-3.3
89,426	+				-1.4
89,426	+				-4.7
89,426	+				-1.2
89,427	-				+0.4
89,479	+				-0.5
89,479	+				-0.4
89,479	+				+0.7
89,479	+				+1.4
89,479	+				+0.1
89,479	+				-1.9
89,479	+				-0.5
89,479	+				-1.0
89,480	-				-2.5
89,480	-				-0.8
89,480	-				-0.0
89,480	-				-0.3
89,480	-				-2.0
89,551	+				+0.9
89,552	-				-0.0
89,552	-				-1.4
89,552	-				-1.7
89,552	-				-2.5
89,552	-				-0.4
89,659	+		GFF2041	0.22	-0.3
89,659	+		GFF2041	0.22	-1.2
89,659	+		GFF2041	0.22	-3.0
89,659	+		GFF2041	0.22	-1.5
89,659	+		GFF2041	0.22	-0.7
89,660	-		GFF2041	0.22	-2.4
89,660	-		GFF2041	0.22	-1.6
89,660	-		GFF2041	0.22	-0.5
89,660	-		GFF2041	0.22	-1.2
89,749	+		GFF2041	0.32	+2.0
89,992	+		GFF2041	0.62	-0.0
89,992	+		GFF2041	0.62	+0.3
89,993	-		GFF2041	0.62	-2.1
89,993	-		GFF2041	0.62	+1.6
90,365	+				+1.6
90,365	+				-0.0
90,365	+				-2.8
90,365	+				+0.3
90,365	+				+0.4
90,365	+				+1.5
90,365	+				+1.2
90,366	-				+1.2
90,366	-				-0.5
90,366	-				+1.7
90,366	-				+1.9
90,366	-				-0.8
90,366	-				+0.5
90,366	-				-2.6
90,447	+				-1.2
90,447	+				-0.0
90,448	-				+0.1
90,448	-				-3.1
90,448	-				+2.3
90,577	+		GFF2042	0.17	-1.6
90,577	+		GFF2042	0.17	-3.9
90,577	+		GFF2042	0.17	+0.9
90,577	+		GFF2042	0.17	-1.9
90,577	+		GFF2042	0.17	-2.3
90,577	+		GFF2042	0.17	+0.2
90,578	-		GFF2042	0.17	+0.7
90,578	-		GFF2042	0.17	-0.7
90,578	-		GFF2042	0.17	-0.3
90,578	-		GFF2042	0.17	-3.3
90,578	-		GFF2042	0.17	+1.9
90,578	-		GFF2042	0.17	-2.1
90,578	-		GFF2042	0.17	-2.1
90,578	-		GFF2042	0.17	-1.2
90,578	-		GFF2042	0.17	+0.4
90,786	+		GFF2042	0.38	-0.5
90,786	+		GFF2042	0.38	-1.6
90,786	+		GFF2042	0.38	-0.3
90,786	+		GFF2042	0.38	-0.2
90,786	+		GFF2042	0.38	-2.5
90,786	+		GFF2042	0.38	+0.4
90,786	+		GFF2042	0.38	-0.2
90,787	-		GFF2042	0.38	-0.6
90,787	-		GFF2042	0.38	+0.6
90,787	-		GFF2042	0.38	-0.2
90,787	-		GFF2042	0.38	+2.1
90,787	-		GFF2042	0.38	-1.5
90,787	-		GFF2042	0.38	-1.2