Strain Fitness in Variovorax sp. SCN45 around GFF2038

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2037 and GFF2038 are separated by 142 nucleotidesGFF2038 and GFF2039 overlap by 14 nucleotidesGFF2039 and GFF2040 are separated by 88 nucleotides GFF2037 - Acetylpolyamine aminohydrolase, at 85,415 to 86,455 GFF2037 GFF2038 - ABC transporter, substrate-binding protein (cluster 7, di-/tri-carboxylate), at 86,598 to 87,581 GFF2038 GFF2039 - Transcriptional regulator, AcrR family, at 87,568 to 88,137 GFF2039 GFF2040 - Putative drug efflux protein, at 88,226 to 89,476 GFF2040 Position (kb) 86 87 88Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 85.614 kb on - strand, within GFF2037at 85.614 kb on - strand, within GFF2037at 85.623 kb on - strand, within GFF2037at 85.695 kb on - strand, within GFF2037at 85.695 kb on - strand, within GFF2037at 86.012 kb on + strand, within GFF2037at 86.012 kb on + strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.013 kb on - strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.045 kb on + strand, within GFF2037at 86.046 kb on - strand, within GFF2037at 86.046 kb on - strand, within GFF2037at 86.099 kb on + strand, within GFF2037at 86.099 kb on + strand, within GFF2037at 86.100 kb on - strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.105 kb on + strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.106 kb on - strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.108 kb on + strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.109 kb on - strand, within GFF2037at 86.328 kb on - strand, within GFF2037at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.868 kb on + strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.869 kb on - strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.910 kb on + strand, within GFF2038at 86.911 kb on - strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.952 kb on + strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.953 kb on - strand, within GFF2038at 86.973 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.066 kb on + strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.067 kb on - strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.153 kb on + strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.154 kb on - strand, within GFF2038at 87.327 kb on + strand, within GFF2038at 87.328 kb on - strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.438 kb on + strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.439 kb on - strand, within GFF2038at 87.459 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.477 kb on + strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.478 kb on - strand, within GFF2038at 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.495 kb on + strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.496 kb on - strandat 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.822 kb on + strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.823 kb on - strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.974 kb on + strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 87.975 kb on - strand, within GFF2039at 88.148 kb on + strandat 88.185 kb on + strandat 88.186 kb on - strandat 88.186 kb on - strandat 88.439 kb on + strand, within GFF2040

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
85,614 - GFF2037 0.19 +0.4
85,614 - GFF2037 0.19 -0.0
85,623 - GFF2037 0.20 +1.0
85,695 - GFF2037 0.27 -1.2
85,695 - GFF2037 0.27 -2.8
86,012 + GFF2037 0.57 +1.6
86,012 + GFF2037 0.57 -3.3
86,013 - GFF2037 0.57 -1.6
86,013 - GFF2037 0.57 +1.3
86,013 - GFF2037 0.57 -2.9
86,013 - GFF2037 0.57 -0.9
86,013 - GFF2037 0.57 -1.5
86,013 - GFF2037 0.57 -0.1
86,045 + GFF2037 0.61 -2.5
86,045 + GFF2037 0.61 -2.4
86,045 + GFF2037 0.61 +0.6
86,045 + GFF2037 0.61 +2.6
86,045 + GFF2037 0.61 -0.8
86,046 - GFF2037 0.61 +2.0
86,046 - GFF2037 0.61 -2.9
86,099 + GFF2037 0.66 -1.0
86,099 + GFF2037 0.66 -2.2
86,100 - GFF2037 0.66 -2.7
86,105 + GFF2037 0.66 -0.1
86,105 + GFF2037 0.66 -1.6
86,105 + GFF2037 0.66 -0.3
86,105 + GFF2037 0.66 -0.6
86,105 + GFF2037 0.66 -3.8
86,105 + GFF2037 0.66 +2.0
86,106 - GFF2037 0.66 -1.9
86,106 - GFF2037 0.66 -2.3
86,106 - GFF2037 0.66 -0.2
86,106 - GFF2037 0.66 -1.6
86,106 - GFF2037 0.66 +2.1
86,108 + GFF2037 0.67 -0.4
86,108 + GFF2037 0.67 -1.5
86,108 + GFF2037 0.67 -0.0
86,108 + GFF2037 0.67 +2.1
86,108 + GFF2037 0.67 -2.5
86,108 + GFF2037 0.67 -0.0
86,109 - GFF2037 0.67 +1.0
86,109 - GFF2037 0.67 -0.5
86,109 - GFF2037 0.67 -0.8
86,109 - GFF2037 0.67 -1.4
86,109 - GFF2037 0.67 -3.3
86,109 - GFF2037 0.67 -0.4
86,109 - GFF2037 0.67 +1.2
86,328 - GFF2037 0.88 -1.5
86,868 + GFF2038 0.27 +1.1
86,868 + GFF2038 0.27 -0.3
86,868 + GFF2038 0.27 +0.1
86,868 + GFF2038 0.27 +0.8
86,868 + GFF2038 0.27 -0.2
86,869 - GFF2038 0.28 +0.2
86,869 - GFF2038 0.28 -0.4
86,869 - GFF2038 0.28 -1.9
86,869 - GFF2038 0.28 -0.6
86,910 + GFF2038 0.32 +3.7
86,910 + GFF2038 0.32 -2.2
86,910 + GFF2038 0.32 +0.7
86,910 + GFF2038 0.32 -2.9
86,911 - GFF2038 0.32 -0.8
86,952 + GFF2038 0.36 -0.5
86,952 + GFF2038 0.36 -0.6
86,952 + GFF2038 0.36 +0.1
86,952 + GFF2038 0.36 +0.3
86,952 + GFF2038 0.36 +0.5
86,952 + GFF2038 0.36 -0.1
86,952 + GFF2038 0.36 -1.5
86,952 + GFF2038 0.36 +0.0
86,952 + GFF2038 0.36 +0.1
86,952 + GFF2038 0.36 +0.4
86,953 - GFF2038 0.36 -1.3
86,953 - GFF2038 0.36 -0.2
86,953 - GFF2038 0.36 +1.2
86,953 - GFF2038 0.36 +1.5
86,953 - GFF2038 0.36 -1.3
86,953 - GFF2038 0.36 +1.0
86,953 - GFF2038 0.36 -2.8
86,953 - GFF2038 0.36 -0.3
86,953 - GFF2038 0.36 +1.7
86,973 + GFF2038 0.38 +1.0
87,066 + GFF2038 0.48 -1.8
87,066 + GFF2038 0.48 +1.5
87,066 + GFF2038 0.48 -0.7
87,066 + GFF2038 0.48 +1.0
87,066 + GFF2038 0.48 -0.8
87,066 + GFF2038 0.48 +1.8
87,066 + GFF2038 0.48 +1.0
87,067 - GFF2038 0.48 +1.2
87,067 - GFF2038 0.48 -0.0
87,067 - GFF2038 0.48 +0.4
87,067 - GFF2038 0.48 +2.0
87,067 - GFF2038 0.48 +2.0
87,153 + GFF2038 0.56 +0.7
87,153 + GFF2038 0.56 -0.3
87,153 + GFF2038 0.56 +1.1
87,153 + GFF2038 0.56 +0.8
87,153 + GFF2038 0.56 -2.0
87,153 + GFF2038 0.56 -1.5
87,153 + GFF2038 0.56 +2.0
87,154 - GFF2038 0.57 +0.6
87,154 - GFF2038 0.57 -1.0
87,154 - GFF2038 0.57 +0.5
87,154 - GFF2038 0.57 +2.2
87,154 - GFF2038 0.57 +1.2
87,327 + GFF2038 0.74 -1.2
87,328 - GFF2038 0.74 +1.7
87,438 + GFF2038 0.85 -2.3
87,438 + GFF2038 0.85 -1.7
87,438 + GFF2038 0.85 -0.1
87,438 + GFF2038 0.85 -2.5
87,438 + GFF2038 0.85 +0.7
87,438 + GFF2038 0.85 +0.0
87,438 + GFF2038 0.85 +1.0
87,439 - GFF2038 0.85 -0.4
87,439 - GFF2038 0.85 -3.5
87,439 - GFF2038 0.85 -1.9
87,439 - GFF2038 0.85 -2.1
87,459 + GFF2038 0.88 -1.0
87,477 + GFF2038 0.89 -0.2
87,477 + GFF2038 0.89 -1.0
87,477 + GFF2038 0.89 -0.7
87,477 + GFF2038 0.89 +0.5
87,477 + GFF2038 0.89 +4.3
87,477 + GFF2038 0.89 +1.2
87,477 + GFF2038 0.89 -0.0
87,478 - GFF2038 0.89 -2.9
87,478 - GFF2038 0.89 -2.6
87,478 - GFF2038 0.89 +2.6
87,478 - GFF2038 0.89 -2.7
87,478 - GFF2038 0.89 -1.0
87,478 - GFF2038 0.89 +0.4
87,478 - GFF2038 0.89 -0.3
87,495 + -0.2
87,495 + +0.1
87,495 + -2.5
87,495 + -3.1
87,495 + -0.0
87,495 + +0.2
87,496 - -2.6
87,496 - +0.2
87,496 - -2.8
87,496 - -0.0
87,496 - -0.0
87,496 - -0.0
87,496 - -1.1
87,496 - +0.9
87,496 - -0.8
87,822 + GFF2039 0.45 -1.7
87,822 + GFF2039 0.45 +1.2
87,822 + GFF2039 0.45 +2.2
87,822 + GFF2039 0.45 +2.0
87,822 + GFF2039 0.45 -3.4
87,822 + GFF2039 0.45 -2.7
87,822 + GFF2039 0.45 +0.4
87,822 + GFF2039 0.45 -0.9
87,823 - GFF2039 0.45 -0.4
87,823 - GFF2039 0.45 -0.3
87,823 - GFF2039 0.45 -2.8
87,823 - GFF2039 0.45 -2.5
87,823 - GFF2039 0.45 -1.5
87,823 - GFF2039 0.45 -1.9
87,823 - GFF2039 0.45 -1.8
87,974 + GFF2039 0.71 -0.5
87,974 + GFF2039 0.71 -2.4
87,974 + GFF2039 0.71 -0.4
87,974 + GFF2039 0.71 -0.7
87,974 + GFF2039 0.71 -0.4
87,974 + GFF2039 0.71 -1.8
87,975 - GFF2039 0.71 +1.2
87,975 - GFF2039 0.71 -0.8
87,975 - GFF2039 0.71 -2.1
87,975 - GFF2039 0.71 +1.0
88,148 + -1.3
88,185 + -1.0
88,186 - -1.0
88,186 - +0.4
88,439 + GFF2040 0.17 -3.3

Or see this region's nucleotide sequence