Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2022 and GFF2023 are separated by 137 nucleotides GFF2023 and GFF2024 are separated by 3 nucleotides GFF2024 and GFF2025 are separated by 15 nucleotides
GFF2022 - Acyl-CoA dehydrogenase, at 65,923 to 67,092
GFF2022
GFF2023 - Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4), at 67,230 to 68,150
GFF2023
GFF2024 - L-lysine permease, at 68,154 to 68,795
GFF2024
GFF2025 - Uncharacterized protein SCO3165, at 68,811 to 69,299
GFF2025
Position (kb) 67
68
69 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 66.493 kb on + strand, within GFF2022 at 66.493 kb on + strand, within GFF2022 at 66.494 kb on - strand, within GFF2022 at 66.494 kb on - strand, within GFF2022 at 66.494 kb on - strand, within GFF2022 at 66.637 kb on + strand, within GFF2022 at 66.637 kb on + strand, within GFF2022 at 66.637 kb on + strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.638 kb on - strand, within GFF2022 at 66.727 kb on + strand, within GFF2022 at 66.728 kb on - strand, within GFF2022 at 66.728 kb on - strand, within GFF2022 at 66.728 kb on - strand, within GFF2022 at 66.853 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.898 kb on + strand, within GFF2022 at 66.899 kb on - strand, within GFF2022 at 66.899 kb on - strand, within GFF2022 at 66.964 kb on + strand, within GFF2022 at 66.964 kb on + strand, within GFF2022 at 66.965 kb on - strand, within GFF2022 at 66.976 kb on + strand at 66.976 kb on + strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 66.977 kb on - strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.006 kb on + strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.007 kb on - strand at 67.010 kb on + strand at 67.010 kb on + strand at 67.010 kb on + strand at 67.087 kb on + strand at 67.087 kb on + strand at 67.088 kb on - strand at 67.137 kb on + strand at 67.137 kb on + strand at 67.138 kb on - strand at 67.138 kb on - strand at 67.138 kb on - strand at 67.155 kb on + strand at 67.155 kb on + strand at 67.156 kb on - strand at 67.156 kb on - strand at 67.458 kb on + strand, within GFF2023 at 67.458 kb on + strand, within GFF2023 at 67.459 kb on - strand, within GFF2023 at 67.723 kb on - strand, within GFF2023 at 67.875 kb on + strand, within GFF2023 at 67.875 kb on + strand, within GFF2023 at 67.876 kb on - strand, within GFF2023 at 67.966 kb on - strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.010 kb on + strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.011 kb on - strand, within GFF2023 at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.076 kb on + strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.077 kb on - strand at 68.253 kb on + strand, within GFF2024 at 68.253 kb on + strand, within GFF2024 at 68.253 kb on + strand, within GFF2024 at 68.253 kb on + strand, within GFF2024 at 68.253 kb on + strand, within GFF2024 at 68.254 kb on - strand, within GFF2024 at 68.254 kb on - strand, within GFF2024 at 68.397 kb on + strand, within GFF2024 at 68.397 kb on + strand, within GFF2024 at 68.397 kb on + strand, within GFF2024 at 68.397 kb on + strand, within GFF2024 at 68.398 kb on - strand, within GFF2024 at 68.398 kb on - strand, within GFF2024 at 68.398 kb on - strand, within GFF2024 at 68.664 kb on + strand, within GFF2024 at 68.664 kb on + strand, within GFF2024 at 68.796 kb on + strand at 68.796 kb on + strand at 68.796 kb on + strand at 68.797 kb on - strand at 68.829 kb on - strand at 69.023 kb on + strand, within GFF2025 at 69.023 kb on + strand, within GFF2025 at 69.023 kb on + strand, within GFF2025 at 69.023 kb on + strand, within GFF2025 at 69.024 kb on - strand, within GFF2025 at 69.024 kb on - strand, within GFF2025 at 69.024 kb on - strand, within GFF2025 at 69.024 kb on - strand, within GFF2025 at 69.024 kb on - strand, within GFF2025
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 66,493 + GFF2022 0.49 -0.0 66,493 + GFF2022 0.49 -2.4 66,494 - GFF2022 0.49 +0.4 66,494 - GFF2022 0.49 +0.1 66,494 - GFF2022 0.49 -2.9 66,637 + GFF2022 0.61 +0.0 66,637 + GFF2022 0.61 -1.2 66,637 + GFF2022 0.61 -1.3 66,638 - GFF2022 0.61 -1.7 66,638 - GFF2022 0.61 +1.6 66,638 - GFF2022 0.61 +1.0 66,638 - GFF2022 0.61 -3.1 66,727 + GFF2022 0.69 -1.6 66,728 - GFF2022 0.69 -1.9 66,728 - GFF2022 0.69 -0.4 66,728 - GFF2022 0.69 -1.8 66,853 + GFF2022 0.79 -0.6 66,898 + GFF2022 0.83 -2.7 66,898 + GFF2022 0.83 +0.1 66,898 + GFF2022 0.83 -2.0 66,898 + GFF2022 0.83 -0.2 66,898 + GFF2022 0.83 +0.5 66,899 - GFF2022 0.83 +1.3 66,899 - GFF2022 0.83 -0.9 66,964 + GFF2022 0.89 +1.7 66,964 + GFF2022 0.89 -1.0 66,965 - GFF2022 0.89 -0.1 66,976 + -4.3 66,976 + +2.0 66,977 - +0.1 66,977 - +0.4 66,977 - +0.7 66,977 - -1.1 66,977 - -2.1 66,977 - -0.6 66,977 - -2.2 66,977 - +1.5 67,006 + -0.1 67,006 + +2.2 67,006 + -1.6 67,006 + +1.1 67,006 + -2.3 67,006 + +2.0 67,006 + -2.2 67,006 + +0.6 67,006 + -2.2 67,006 + +0.9 67,006 + -0.6 67,007 - +0.7 67,007 - -2.6 67,007 - +2.0 67,007 - +0.1 67,007 - +1.6 67,010 + +1.0 67,010 + -0.0 67,010 + -1.3 67,087 + -4.1 67,087 + +1.0 67,088 - -1.3 67,137 + -4.4 67,137 + +1.9 67,138 - +2.6 67,138 - +0.3 67,138 - -1.2 67,155 + -2.2 67,155 + +0.3 67,156 - +0.4 67,156 - -0.6 67,458 + GFF2023 0.25 -0.0 67,458 + GFF2023 0.25 -4.0 67,459 - GFF2023 0.25 -0.0 67,723 - GFF2023 0.54 -0.6 67,875 + GFF2023 0.70 +0.1 67,875 + GFF2023 0.70 -1.6 67,876 - GFF2023 0.70 +0.5 67,966 - GFF2023 0.80 -2.7 68,010 + GFF2023 0.85 -3.3 68,010 + GFF2023 0.85 +1.2 68,010 + GFF2023 0.85 -0.6 68,010 + GFF2023 0.85 -4.0 68,011 - GFF2023 0.85 +0.7 68,011 - GFF2023 0.85 -0.6 68,011 - GFF2023 0.85 +0.4 68,011 - GFF2023 0.85 +3.0 68,011 - GFF2023 0.85 +0.9 68,011 - GFF2023 0.85 -1.7 68,076 + -1.1 68,076 + +0.2 68,076 + -3.7 68,076 + -0.3 68,076 + +0.7 68,076 + -2.1 68,077 - -1.0 68,077 - +1.3 68,077 - -0.0 68,077 - -3.7 68,077 - -0.1 68,077 - -0.8 68,077 - -0.6 68,253 + GFF2024 0.15 -1.3 68,253 + GFF2024 0.15 +1.5 68,253 + GFF2024 0.15 -1.3 68,253 + GFF2024 0.15 +0.7 68,253 + GFF2024 0.15 -1.2 68,254 - GFF2024 0.16 +0.6 68,254 - GFF2024 0.16 +0.4 68,397 + GFF2024 0.38 -0.6 68,397 + GFF2024 0.38 +1.7 68,397 + GFF2024 0.38 +0.4 68,397 + GFF2024 0.38 +0.0 68,398 - GFF2024 0.38 +0.6 68,398 - GFF2024 0.38 +1.8 68,398 - GFF2024 0.38 -0.4 68,664 + GFF2024 0.79 -0.2 68,664 + GFF2024 0.79 -3.2 68,796 + -1.5 68,796 + -0.2 68,796 + -1.9 68,797 - -1.7 68,829 - -0.2 69,023 + GFF2025 0.43 -2.2 69,023 + GFF2025 0.43 +1.2 69,023 + GFF2025 0.43 -2.6 69,023 + GFF2025 0.43 +0.0 69,024 - GFF2025 0.44 -1.5 69,024 - GFF2025 0.44 +1.0 69,024 - GFF2025 0.44 +1.4 69,024 - GFF2025 0.44 +0.6 69,024 - GFF2025 0.44 -1.3
Or see this region's nucleotide sequence