Strain Fitness in Variovorax sp. SCN45 around GFF2006

Experiment: Community=guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2005 and GFF2006 are separated by 140 nucleotidesGFF2006 and GFF2007 are separated by 143 nucleotides GFF2005 - Transcriptional regulator, AraC family, at 48,463 to 49,491 GFF2005 GFF2006 - Isovaleryl-CoA dehydrogenase (EC 1.3.8.4), at 49,632 to 50,804 GFF2006 GFF2007 - Acetoacetyl-CoA synthetase [leucine] (EC 6.2.1.16), at 50,948 to 52,627 GFF2007 Position (kb) 49 50 51Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 48.788 kb on + strand, within GFF2005at 48.938 kb on + strand, within GFF2005at 48.939 kb on - strand, within GFF2005at 48.939 kb on - strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.019 kb on + strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.020 kb on - strand, within GFF2005at 49.120 kb on + strand, within GFF2005at 49.232 kb on + strand, within GFF2005at 49.232 kb on + strand, within GFF2005at 49.233 kb on - strand, within GFF2005at 49.233 kb on - strand, within GFF2005at 49.415 kb on + strandat 49.558 kb on + strandat 49.842 kb on + strand, within GFF2006at 49.842 kb on + strand, within GFF2006at 49.905 kb on + strand, within GFF2006at 49.906 kb on - strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.974 kb on + strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 49.975 kb on - strand, within GFF2006at 50.085 kb on + strand, within GFF2006at 50.085 kb on + strand, within GFF2006at 50.086 kb on - strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.088 kb on + strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.089 kb on - strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.151 kb on + strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.152 kb on - strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.511 kb on + strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.512 kb on - strand, within GFF2006at 50.538 kb on + strand, within GFF2006at 50.538 kb on + strand, within GFF2006at 50.538 kb on + strand, within GFF2006at 50.544 kb on + strand, within GFF2006at 50.682 kb on + strand, within GFF2006at 50.730 kb on + strandat 50.731 kb on - strandat 50.731 kb on - strandat 50.731 kb on - strandat 50.738 kb on - strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.802 kb on + strandat 50.803 kb on - strandat 50.803 kb on - strandat 50.803 kb on - strandat 50.803 kb on - strandat 50.979 kb on - strandat 50.979 kb on - strandat 50.979 kb on - strandat 51.105 kb on - strandat 51.105 kb on - strandat 51.272 kb on + strand, within GFF2007at 51.273 kb on - strand, within GFF2007at 51.294 kb on - strand, within GFF2007at 51.294 kb on - strand, within GFF2007at 51.294 kb on - strand, within GFF2007at 51.356 kb on + strand, within GFF2007at 51.357 kb on - strand, within GFF2007at 51.357 kb on - strand, within GFF2007at 51.689 kb on + strand, within GFF2007at 51.689 kb on + strand, within GFF2007at 51.689 kb on + strand, within GFF2007at 51.690 kb on - strand, within GFF2007at 51.753 kb on - strand, within GFF2007

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
remove
48,788 + GFF2005 0.32 -1.2
48,938 + GFF2005 0.46 +1.4
48,939 - GFF2005 0.46 +0.4
48,939 - GFF2005 0.46 -2.9
49,019 + GFF2005 0.54 -1.2
49,019 + GFF2005 0.54 -0.7
49,019 + GFF2005 0.54 +3.1
49,019 + GFF2005 0.54 +1.0
49,020 - GFF2005 0.54 -1.4
49,020 - GFF2005 0.54 -2.9
49,020 - GFF2005 0.54 -1.4
49,020 - GFF2005 0.54 -1.6
49,120 + GFF2005 0.64 -2.5
49,232 + GFF2005 0.75 +0.4
49,232 + GFF2005 0.75 -0.0
49,233 - GFF2005 0.75 +2.9
49,233 - GFF2005 0.75 -2.3
49,415 + -0.1
49,558 + +0.6
49,842 + GFF2006 0.18 -0.8
49,842 + GFF2006 0.18 -4.1
49,905 + GFF2006 0.23 -2.0
49,906 - GFF2006 0.23 -0.4
49,974 + GFF2006 0.29 -0.0
49,974 + GFF2006 0.29 -1.2
49,974 + GFF2006 0.29 -0.8
49,974 + GFF2006 0.29 -0.4
49,974 + GFF2006 0.29 -1.4
49,974 + GFF2006 0.29 -0.1
49,975 - GFF2006 0.29 -1.3
49,975 - GFF2006 0.29 +2.0
49,975 - GFF2006 0.29 -1.4
49,975 - GFF2006 0.29 -3.8
49,975 - GFF2006 0.29 -0.4
49,975 - GFF2006 0.29 -0.2
50,085 + GFF2006 0.39 -1.2
50,085 + GFF2006 0.39 -1.2
50,086 - GFF2006 0.39 -2.3
50,088 + GFF2006 0.39 -2.6
50,088 + GFF2006 0.39 +0.4
50,088 + GFF2006 0.39 +1.8
50,088 + GFF2006 0.39 -0.8
50,088 + GFF2006 0.39 -3.3
50,088 + GFF2006 0.39 -1.6
50,088 + GFF2006 0.39 +0.2
50,088 + GFF2006 0.39 -1.0
50,088 + GFF2006 0.39 -0.3
50,088 + GFF2006 0.39 -0.6
50,089 - GFF2006 0.39 +0.7
50,089 - GFF2006 0.39 -1.7
50,089 - GFF2006 0.39 -1.8
50,089 - GFF2006 0.39 +0.2
50,089 - GFF2006 0.39 +0.3
50,089 - GFF2006 0.39 -2.5
50,089 - GFF2006 0.39 -1.9
50,089 - GFF2006 0.39 -2.6
50,089 - GFF2006 0.39 -1.2
50,089 - GFF2006 0.39 -1.8
50,089 - GFF2006 0.39 +0.1
50,089 - GFF2006 0.39 -1.2
50,151 + GFF2006 0.44 -1.2
50,151 + GFF2006 0.44 -2.1
50,151 + GFF2006 0.44 -1.0
50,152 - GFF2006 0.44 +0.5
50,152 - GFF2006 0.44 -0.6
50,152 - GFF2006 0.44 -1.7
50,511 + GFF2006 0.75 -1.9
50,511 + GFF2006 0.75 -0.7
50,511 + GFF2006 0.75 -0.6
50,511 + GFF2006 0.75 -1.5
50,511 + GFF2006 0.75 -3.1
50,511 + GFF2006 0.75 -1.6
50,511 + GFF2006 0.75 -5.0
50,511 + GFF2006 0.75 -1.6
50,511 + GFF2006 0.75 -1.2
50,511 + GFF2006 0.75 -1.8
50,511 + GFF2006 0.75 +0.9
50,511 + GFF2006 0.75 -0.1
50,511 + GFF2006 0.75 -2.2
50,511 + GFF2006 0.75 -1.7
50,511 + GFF2006 0.75 -0.4
50,511 + GFF2006 0.75 -0.4
50,511 + GFF2006 0.75 -1.9
50,511 + GFF2006 0.75 -0.7
50,512 - GFF2006 0.75 +2.8
50,512 - GFF2006 0.75 -3.6
50,512 - GFF2006 0.75 -1.3
50,512 - GFF2006 0.75 -2.5
50,512 - GFF2006 0.75 -2.0
50,512 - GFF2006 0.75 -2.7
50,512 - GFF2006 0.75 -2.5
50,538 + GFF2006 0.77 -3.1
50,538 + GFF2006 0.77 -2.7
50,538 + GFF2006 0.77 +0.1
50,544 + GFF2006 0.78 -2.9
50,682 + GFF2006 0.90 -0.6
50,730 + +0.5
50,731 - -2.7
50,731 - -0.7
50,731 - -3.0
50,738 - -0.4
50,802 + -0.6
50,802 + +0.6
50,802 + -2.1
50,802 + -0.2
50,802 + +0.1
50,802 + -0.6
50,802 + -0.2
50,802 + -0.8
50,803 - -2.1
50,803 - -0.7
50,803 - -1.5
50,803 - +0.4
50,979 - -0.3
50,979 - +1.5
50,979 - +0.2
51,105 - -0.8
51,105 - -1.0
51,272 + GFF2007 0.19 -1.7
51,273 - GFF2007 0.19 -1.0
51,294 - GFF2007 0.21 +0.2
51,294 - GFF2007 0.21 -0.8
51,294 - GFF2007 0.21 +0.6
51,356 + GFF2007 0.24 +0.1
51,357 - GFF2007 0.24 +0.3
51,357 - GFF2007 0.24 -1.6
51,689 + GFF2007 0.44 -1.2
51,689 + GFF2007 0.44 -0.6
51,689 + GFF2007 0.44 -2.3
51,690 - GFF2007 0.44 -2.9
51,753 - GFF2007 0.48 +0.6

Or see this region's nucleotide sequence