Strain Fitness in Variovorax sp. SCN45 around GFF1939

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1938 and GFF1939 are separated by 37 nucleotidesGFF1939 and GFF1940 are separated by 7 nucleotides GFF1938 - hypothetical protein, at 631,752 to 632,738 GFF1938 GFF1939 - hypothetical protein, at 632,776 to 633,756 GFF1939 GFF1940 - Adenylosuccinate synthetase-like protein, at 633,764 to 635,107 GFF1940 Position (kb) 632 633 634Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 631.836 kb on + strandat 631.837 kb on - strandat 631.837 kb on - strandat 631.837 kb on - strandat 633.209 kb on - strand, within GFF1939at 633.223 kb on + strand, within GFF1939at 633.223 kb on + strand, within GFF1939at 633.224 kb on - strand, within GFF1939at 633.224 kb on - strand, within GFF1939at 633.224 kb on - strand, within GFF1939at 633.224 kb on - strand, within GFF1939at 633.224 kb on - strand, within GFF1939

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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631,836 + +0.8
631,837 - +1.0
631,837 - +0.0
631,837 - +0.9
633,209 - GFF1939 0.44 +1.3
633,223 + GFF1939 0.46 +1.3
633,223 + GFF1939 0.46 +0.0
633,224 - GFF1939 0.46 -0.7
633,224 - GFF1939 0.46 -1.3
633,224 - GFF1939 0.46 -3.0
633,224 - GFF1939 0.46 +1.9
633,224 - GFF1939 0.46 -1.4

Or see this region's nucleotide sequence