Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1929 and GFF1930 are separated by 256 nucleotides GFF1930 and GFF1931 overlap by 4 nucleotides
GFF1929 - Transcriptional regulator, AraC family, at 609,311 to 610,228
GFF1929
GFF1930 - RTX toxin transporter, ATP-binding protein, at 610,485 to 612,728
GFF1930
GFF1931 - RTX toxin transporter, determinant D, at 612,725 to 614,209
GFF1931
Position (kb) 610
611
612
613 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 609.572 kb on + strand, within GFF1929 at 609.572 kb on + strand, within GFF1929 at 609.692 kb on + strand, within GFF1929 at 609.692 kb on + strand, within GFF1929 at 609.693 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.924 kb on - strand, within GFF1929 at 609.995 kb on + strand, within GFF1929 at 610.207 kb on + strand at 610.208 kb on - strand at 610.226 kb on + strand at 610.227 kb on - strand at 610.227 kb on - strand at 610.304 kb on - strand at 610.368 kb on - strand at 610.392 kb on - strand at 610.392 kb on - strand at 610.427 kb on + strand at 610.460 kb on + strand at 610.463 kb on + strand at 610.469 kb on - strand at 610.493 kb on - strand at 611.173 kb on + strand, within GFF1930 at 611.278 kb on - strand, within GFF1930 at 611.419 kb on - strand, within GFF1930 at 611.419 kb on - strand, within GFF1930 at 611.463 kb on + strand, within GFF1930 at 611.464 kb on - strand, within GFF1930 at 611.641 kb on - strand, within GFF1930 at 611.713 kb on + strand, within GFF1930 at 612.340 kb on - strand, within GFF1930 at 612.340 kb on - strand, within GFF1930 at 612.648 kb on + strand at 612.816 kb on - strand at 613.647 kb on - strand, within GFF1931
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 609,572 + GFF1929 0.28 -0.5 609,572 + GFF1929 0.28 +3.5 609,692 + GFF1929 0.42 -0.6 609,692 + GFF1929 0.42 -2.5 609,693 - GFF1929 0.42 -1.0 609,924 - GFF1929 0.67 -0.3 609,924 - GFF1929 0.67 +0.5 609,924 - GFF1929 0.67 -0.3 609,995 + GFF1929 0.75 -0.0 610,207 + -1.2 610,208 - -1.2 610,226 + -1.6 610,227 - -1.0 610,227 - -0.9 610,304 - +3.9 610,368 - -2.3 610,392 - -3.4 610,392 - -2.6 610,427 + -1.1 610,460 + +2.2 610,463 + -1.2 610,469 - +0.0 610,493 - -0.3 611,173 + GFF1930 0.31 +0.7 611,278 - GFF1930 0.35 -1.2 611,419 - GFF1930 0.42 -0.6 611,419 - GFF1930 0.42 -0.6 611,463 + GFF1930 0.44 -1.4 611,464 - GFF1930 0.44 -3.1 611,641 - GFF1930 0.52 -1.9 611,713 + GFF1930 0.55 -2.8 612,340 - GFF1930 0.83 -1.3 612,340 - GFF1930 0.83 -1.2 612,648 + +1.6 612,816 - -1.0 613,647 - GFF1931 0.62 +0.3
Or see this region's nucleotide sequence