Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1864 and GFF1865 are separated by 96 nucleotides GFF1865 and GFF1866 are separated by 33 nucleotides
GFF1864 - Transcriptional regulator, LysR family, at 538,849 to 539,802
GFF1864
GFF1865 - Transcriptional regulator, AraC family, at 539,899 to 540,690
GFF1865
GFF1866 - Dihydropyrimidinase (EC 3.5.2.2) @ D-hydantoinase (EC 3.5.2.2), at 540,724 to 542,148
GFF1866
Position (kb) 539
540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 538.915 kb on + strand at 538.916 kb on - strand at 538.916 kb on - strand at 539.062 kb on + strand, within GFF1864 at 539.062 kb on + strand, within GFF1864 at 539.062 kb on + strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.326 kb on + strand, within GFF1864 at 539.681 kb on + strand, within GFF1864 at 539.695 kb on + strand, within GFF1864 at 539.893 kb on + strand at 539.894 kb on - strand at 539.944 kb on + strand at 539.945 kb on - strand at 539.945 kb on - strand at 539.945 kb on - strand at 540.155 kb on - strand, within GFF1865 at 540.484 kb on + strand, within GFF1865 at 540.484 kb on + strand, within GFF1865 at 540.485 kb on - strand, within GFF1865 at 540.866 kb on + strand at 540.876 kb on - strand, within GFF1866 at 540.990 kb on - strand, within GFF1866 at 540.990 kb on - strand, within GFF1866 at 540.990 kb on - strand, within GFF1866 at 541.166 kb on + strand, within GFF1866 at 541.167 kb on - strand, within GFF1866 at 541.228 kb on + strand, within GFF1866 at 541.229 kb on - strand, within GFF1866 at 541.270 kb on + strand, within GFF1866 at 541.271 kb on - strand, within GFF1866 at 541.271 kb on - strand, within GFF1866 at 541.271 kb on - strand, within GFF1866 at 541.289 kb on + strand, within GFF1866 at 541.289 kb on + strand, within GFF1866 at 541.289 kb on + strand, within GFF1866 at 541.290 kb on - strand, within GFF1866 at 541.290 kb on - strand, within GFF1866 at 541.290 kb on - strand, within GFF1866 at 541.290 kb on - strand, within GFF1866 at 541.290 kb on - strand, within GFF1866 at 541.331 kb on + strand, within GFF1866 at 541.332 kb on - strand, within GFF1866 at 541.332 kb on - strand, within GFF1866 at 541.665 kb on - strand, within GFF1866 at 541.673 kb on + strand, within GFF1866 at 541.673 kb on + strand, within GFF1866 at 541.674 kb on - strand, within GFF1866 at 541.674 kb on - strand, within GFF1866
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 538,915 + -2.4 538,916 - +2.5 538,916 - +0.9 539,062 + GFF1864 0.22 -1.1 539,062 + GFF1864 0.22 +0.1 539,062 + GFF1864 0.22 -0.3 539,063 - GFF1864 0.22 -0.6 539,063 - GFF1864 0.22 -2.6 539,063 - GFF1864 0.22 +0.5 539,063 - GFF1864 0.22 -2.4 539,063 - GFF1864 0.22 -2.2 539,326 + GFF1864 0.50 +0.5 539,681 + GFF1864 0.87 -2.0 539,695 + GFF1864 0.89 +0.2 539,893 + -1.2 539,894 - +1.0 539,944 + +0.4 539,945 - -0.5 539,945 - -2.2 539,945 - +0.7 540,155 - GFF1865 0.32 -0.5 540,484 + GFF1865 0.74 -0.3 540,484 + GFF1865 0.74 -2.4 540,485 - GFF1865 0.74 -1.4 540,866 + -1.9 540,876 - GFF1866 0.11 +1.7 540,990 - GFF1866 0.19 +0.3 540,990 - GFF1866 0.19 +0.9 540,990 - GFF1866 0.19 -1.4 541,166 + GFF1866 0.31 +0.3 541,167 - GFF1866 0.31 +0.3 541,228 + GFF1866 0.35 +0.3 541,229 - GFF1866 0.35 -0.2 541,270 + GFF1866 0.38 -0.6 541,271 - GFF1866 0.38 -0.3 541,271 - GFF1866 0.38 -1.1 541,271 - GFF1866 0.38 +2.1 541,289 + GFF1866 0.40 -2.8 541,289 + GFF1866 0.40 +0.4 541,289 + GFF1866 0.40 +0.4 541,290 - GFF1866 0.40 +0.0 541,290 - GFF1866 0.40 -0.2 541,290 - GFF1866 0.40 +1.3 541,290 - GFF1866 0.40 -1.3 541,290 - GFF1866 0.40 -0.1 541,331 + GFF1866 0.43 -1.0 541,332 - GFF1866 0.43 +0.8 541,332 - GFF1866 0.43 -1.3 541,665 - GFF1866 0.66 +0.8 541,673 + GFF1866 0.67 +2.0 541,673 + GFF1866 0.67 +1.2 541,674 - GFF1866 0.67 +0.0 541,674 - GFF1866 0.67 -0.7
Or see this region's nucleotide sequence