Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1826 and GFF1827 are separated by 464 nucleotides GFF1827 and GFF1828 are separated by 3 nucleotides GFF1828 and GFF1829 are separated by 112 nucleotides GFF1829 and GFF1830 overlap by 1 nucleotides
GFF1826 - hypothetical protein, at 492,095 to 492,298
GFF1826
GFF1827 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 492,763 to 493,170
GFF1827
GFF1828 - phosphodiesterase I, at 493,174 to 495,015
GFF1828
GFF1829 - 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23), at 495,128 to 495,556
GFF1829
GFF1830 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 3, at 495,556 to 496,857
GFF1830
Position (kb) 493
494
495
496 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 492.463 kb on - strand at 492.606 kb on + strand at 492.606 kb on + strand at 492.625 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.712 kb on + strand at 492.713 kb on - strand at 492.713 kb on - strand at 492.713 kb on - strand at 492.714 kb on + strand at 492.715 kb on - strand at 492.715 kb on - strand at 493.175 kb on + strand at 493.175 kb on + strand at 493.175 kb on + strand at 493.334 kb on + strand at 493.335 kb on - strand at 493.339 kb on - strand at 493.457 kb on + strand, within GFF1828 at 493.457 kb on + strand, within GFF1828 at 493.457 kb on + strand, within GFF1828 at 493.458 kb on - strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.463 kb on + strand, within GFF1828 at 493.464 kb on - strand, within GFF1828 at 493.464 kb on - strand, within GFF1828 at 493.616 kb on + strand, within GFF1828 at 493.676 kb on + strand, within GFF1828 at 493.676 kb on + strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.677 kb on - strand, within GFF1828 at 493.688 kb on + strand, within GFF1828 at 493.688 kb on + strand, within GFF1828 at 493.892 kb on + strand, within GFF1828 at 493.982 kb on + strand, within GFF1828 at 494.040 kb on - strand, within GFF1828 at 494.057 kb on + strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.058 kb on - strand, within GFF1828 at 494.108 kb on + strand, within GFF1828 at 494.108 kb on + strand, within GFF1828 at 494.109 kb on - strand, within GFF1828 at 494.171 kb on + strand, within GFF1828 at 494.172 kb on - strand, within GFF1828 at 494.172 kb on - strand, within GFF1828 at 494.277 kb on - strand, within GFF1828 at 494.285 kb on + strand, within GFF1828 at 494.286 kb on - strand, within GFF1828 at 494.318 kb on + strand, within GFF1828 at 494.319 kb on - strand, within GFF1828 at 494.319 kb on - strand, within GFF1828 at 494.417 kb on + strand, within GFF1828 at 494.418 kb on - strand, within GFF1828 at 494.418 kb on - strand, within GFF1828 at 494.847 kb on - strand at 494.904 kb on + strand at 494.905 kb on - strand at 494.979 kb on - strand at 494.979 kb on - strand at 495.256 kb on - strand, within GFF1829 at 495.322 kb on - strand, within GFF1829 at 495.869 kb on + strand, within GFF1830
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 492,463 - +2.3 492,606 + -1.4 492,606 + -0.3 492,625 + -0.5 492,712 + +1.0 492,712 + +1.1 492,712 + +1.2 492,712 + -1.2 492,713 - +0.7 492,713 - +0.4 492,713 - -0.3 492,714 + +0.1 492,715 - -1.2 492,715 - -0.7 493,175 + -1.0 493,175 + +3.8 493,175 + -1.4 493,334 + +1.8 493,335 - -2.0 493,339 - +2.8 493,457 + GFF1828 0.15 -3.3 493,457 + GFF1828 0.15 +3.1 493,457 + GFF1828 0.15 -3.8 493,458 - GFF1828 0.15 +0.2 493,463 + GFF1828 0.16 +0.4 493,463 + GFF1828 0.16 +0.6 493,463 + GFF1828 0.16 -0.7 493,464 - GFF1828 0.16 +0.4 493,464 - GFF1828 0.16 +0.6 493,616 + GFF1828 0.24 -2.4 493,676 + GFF1828 0.27 +0.5 493,676 + GFF1828 0.27 +0.2 493,677 - GFF1828 0.27 -1.6 493,677 - GFF1828 0.27 +0.6 493,677 - GFF1828 0.27 -3.1 493,677 - GFF1828 0.27 +0.7 493,677 - GFF1828 0.27 +0.8 493,677 - GFF1828 0.27 +0.2 493,677 - GFF1828 0.27 -1.7 493,688 + GFF1828 0.28 -2.5 493,688 + GFF1828 0.28 +0.6 493,892 + GFF1828 0.39 -2.6 493,982 + GFF1828 0.44 -0.6 494,040 - GFF1828 0.47 +2.0 494,057 + GFF1828 0.48 +0.8 494,058 - GFF1828 0.48 +2.3 494,058 - GFF1828 0.48 +1.5 494,058 - GFF1828 0.48 +1.2 494,108 + GFF1828 0.51 +2.6 494,108 + GFF1828 0.51 +0.4 494,109 - GFF1828 0.51 -2.7 494,171 + GFF1828 0.54 +2.1 494,172 - GFF1828 0.54 -0.8 494,172 - GFF1828 0.54 +1.5 494,277 - GFF1828 0.60 -0.8 494,285 + GFF1828 0.60 -0.1 494,286 - GFF1828 0.60 -1.1 494,318 + GFF1828 0.62 +1.9 494,319 - GFF1828 0.62 -0.6 494,319 - GFF1828 0.62 -0.2 494,417 + GFF1828 0.67 -1.3 494,418 - GFF1828 0.68 +0.3 494,418 - GFF1828 0.68 +0.3 494,847 - -4.0 494,904 + +0.0 494,905 - -0.4 494,979 - +2.2 494,979 - +0.5 495,256 - GFF1829 0.30 +1.0 495,322 - GFF1829 0.45 +0.5 495,869 + GFF1830 0.24 +0.5
Or see this region's nucleotide sequence