Strain Fitness in Variovorax sp. SCN45 around GFF1805

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1804 and GFF1805 are separated by 73 nucleotidesGFF1805 and GFF1806 are separated by 5 nucleotides GFF1804 - Uncharacterized UPF0118 membrane protein, at 467,462 to 468,580 GFF1804 GFF1805 - Transcriptional regulator, GntR family, at 468,654 to 469,358 GFF1805 GFF1806 - Na+/H+-dicarboxylate symporter, at 469,364 to 470,707 GFF1806 Position (kb) 468 469 470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 467.658 kb on + strand, within GFF1804at 467.658 kb on + strand, within GFF1804at 467.658 kb on + strand, within GFF1804at 467.658 kb on + strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.659 kb on - strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.784 kb on + strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.785 kb on - strand, within GFF1804at 467.985 kb on + strand, within GFF1804at 467.985 kb on + strand, within GFF1804at 467.985 kb on + strand, within GFF1804at 467.986 kb on - strand, within GFF1804at 467.986 kb on - strand, within GFF1804at 467.986 kb on - strand, within GFF1804at 468.063 kb on + strand, within GFF1804at 468.064 kb on - strand, within GFF1804at 468.064 kb on - strand, within GFF1804at 468.064 kb on - strand, within GFF1804at 468.072 kb on + strand, within GFF1804at 468.072 kb on + strand, within GFF1804at 468.072 kb on + strand, within GFF1804at 468.072 kb on + strand, within GFF1804at 468.072 kb on + strand, within GFF1804at 468.073 kb on - strand, within GFF1804at 468.073 kb on - strand, within GFF1804at 468.073 kb on - strand, within GFF1804at 468.073 kb on - strand, within GFF1804at 468.267 kb on + strand, within GFF1804at 468.268 kb on - strand, within GFF1804at 468.268 kb on - strand, within GFF1804at 468.580 kb on + strandat 468.580 kb on + strandat 468.580 kb on + strandat 468.580 kb on + strandat 468.580 kb on + strandat 468.580 kb on + strandat 468.580 kb on + strandat 468.580 kb on + strandat 468.581 kb on - strandat 468.581 kb on - strandat 468.581 kb on - strandat 468.581 kb on - strandat 468.581 kb on - strandat 468.581 kb on - strandat 468.596 kb on + strandat 468.596 kb on + strandat 468.596 kb on + strandat 468.872 kb on - strand, within GFF1805at 469.159 kb on + strand, within GFF1805at 469.159 kb on + strand, within GFF1805at 469.159 kb on + strand, within GFF1805at 469.160 kb on - strand, within GFF1805at 469.160 kb on - strand, within GFF1805at 469.397 kb on + strandat 469.398 kb on - strandat 469.449 kb on + strandat 469.449 kb on + strandat 469.449 kb on + strandat 469.449 kb on + strandat 469.449 kb on + strandat 469.449 kb on + strandat 469.449 kb on + strandat 469.450 kb on - strandat 469.450 kb on - strandat 469.450 kb on - strandat 469.450 kb on - strandat 469.761 kb on - strand, within GFF1806at 469.761 kb on - strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.779 kb on + strand, within GFF1806at 469.780 kb on - strand, within GFF1806at 469.780 kb on - strand, within GFF1806at 469.809 kb on + strand, within GFF1806at 469.809 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.938 kb on + strand, within GFF1806at 469.939 kb on - strand, within GFF1806at 469.939 kb on - strand, within GFF1806at 469.939 kb on - strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.022 kb on + strand, within GFF1806at 470.023 kb on - strand, within GFF1806at 470.070 kb on + strand, within GFF1806at 470.070 kb on + strand, within GFF1806at 470.071 kb on - strand, within GFF1806at 470.071 kb on - strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.352 kb on + strand, within GFF1806at 470.353 kb on - strand, within GFF1806at 470.353 kb on - strand, within GFF1806at 470.353 kb on - strand, within GFF1806at 470.353 kb on - strand, within GFF1806

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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467,658 + GFF1804 0.18 -2.0
467,658 + GFF1804 0.18 -2.1
467,658 + GFF1804 0.18 +0.0
467,658 + GFF1804 0.18 -0.8
467,659 - GFF1804 0.18 +2.0
467,659 - GFF1804 0.18 -1.5
467,659 - GFF1804 0.18 -1.4
467,659 - GFF1804 0.18 -1.0
467,659 - GFF1804 0.18 -2.1
467,659 - GFF1804 0.18 -1.0
467,659 - GFF1804 0.18 -1.2
467,784 + GFF1804 0.29 -1.1
467,784 + GFF1804 0.29 -1.3
467,784 + GFF1804 0.29 -1.9
467,784 + GFF1804 0.29 -2.1
467,784 + GFF1804 0.29 -3.7
467,785 - GFF1804 0.29 +0.7
467,785 - GFF1804 0.29 +0.2
467,785 - GFF1804 0.29 -1.3
467,785 - GFF1804 0.29 +1.0
467,785 - GFF1804 0.29 -0.3
467,785 - GFF1804 0.29 +0.8
467,985 + GFF1804 0.47 +2.3
467,985 + GFF1804 0.47 +0.4
467,985 + GFF1804 0.47 -0.5
467,986 - GFF1804 0.47 +2.1
467,986 - GFF1804 0.47 +2.9
467,986 - GFF1804 0.47 -3.3
468,063 + GFF1804 0.54 -1.3
468,064 - GFF1804 0.54 +0.7
468,064 - GFF1804 0.54 +1.0
468,064 - GFF1804 0.54 +1.0
468,072 + GFF1804 0.55 -3.3
468,072 + GFF1804 0.55 +0.5
468,072 + GFF1804 0.55 +0.9
468,072 + GFF1804 0.55 +1.0
468,072 + GFF1804 0.55 -0.2
468,073 - GFF1804 0.55 +0.5
468,073 - GFF1804 0.55 +0.4
468,073 - GFF1804 0.55 -0.7
468,073 - GFF1804 0.55 +0.1
468,267 + GFF1804 0.72 -1.2
468,268 - GFF1804 0.72 -1.2
468,268 - GFF1804 0.72 -0.2
468,580 + -2.3
468,580 + -1.6
468,580 + -0.7
468,580 + +3.1
468,580 + +0.5
468,580 + +1.5
468,580 + -0.1
468,580 + -3.0
468,581 - -1.3
468,581 - +1.5
468,581 - +1.1
468,581 - -0.6
468,581 - -0.0
468,581 - -1.2
468,596 + +1.8
468,596 + -0.3
468,596 + +0.4
468,872 - GFF1805 0.31 -0.8
469,159 + GFF1805 0.72 +0.9
469,159 + GFF1805 0.72 -0.6
469,159 + GFF1805 0.72 -2.0
469,160 - GFF1805 0.72 -0.3
469,160 - GFF1805 0.72 -1.4
469,397 + +0.0
469,398 - +0.1
469,449 + -0.3
469,449 + +0.4
469,449 + -1.4
469,449 + -2.0
469,449 + +1.5
469,449 + -0.6
469,449 + +1.3
469,450 - -0.6
469,450 - -2.7
469,450 - -2.4
469,450 - +0.2
469,761 - GFF1806 0.30 -0.6
469,761 - GFF1806 0.30 +1.8
469,779 + GFF1806 0.31 +0.3
469,779 + GFF1806 0.31 -0.3
469,779 + GFF1806 0.31 +0.2
469,779 + GFF1806 0.31 +0.3
469,779 + GFF1806 0.31 -0.7
469,779 + GFF1806 0.31 +0.6
469,779 + GFF1806 0.31 +1.0
469,780 - GFF1806 0.31 -2.1
469,780 - GFF1806 0.31 -1.3
469,809 + GFF1806 0.33 -1.6
469,809 + GFF1806 0.33 +0.8
469,938 + GFF1806 0.43 -2.4
469,938 + GFF1806 0.43 -1.2
469,938 + GFF1806 0.43 +1.9
469,938 + GFF1806 0.43 -0.1
469,939 - GFF1806 0.43 +1.1
469,939 - GFF1806 0.43 -1.5
469,939 - GFF1806 0.43 -1.9
470,022 + GFF1806 0.49 -0.2
470,022 + GFF1806 0.49 +0.3
470,022 + GFF1806 0.49 +1.0
470,022 + GFF1806 0.49 -1.6
470,023 - GFF1806 0.49 +0.2
470,070 + GFF1806 0.53 +0.6
470,070 + GFF1806 0.53 -4.1
470,071 - GFF1806 0.53 -1.2
470,071 - GFF1806 0.53 +0.8
470,352 + GFF1806 0.74 -1.9
470,352 + GFF1806 0.74 -0.2
470,352 + GFF1806 0.74 +1.3
470,352 + GFF1806 0.74 +0.9
470,352 + GFF1806 0.74 -1.3
470,353 - GFF1806 0.74 -2.5
470,353 - GFF1806 0.74 -1.2
470,353 - GFF1806 0.74 -2.5
470,353 - GFF1806 0.74 -1.2

Or see this region's nucleotide sequence