Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1772 and GFF1773 are separated by 40 nucleotides GFF1773 and GFF1774 are separated by 128 nucleotides GFF1774 and GFF1775 overlap by 4 nucleotides
GFF1772 - Putative Rieske (2Fe-2S) family oxidoreductase, large subunit, at 434,207 to 435,289
GFF1772
GFF1773 - D-amino acid dehydrogenase (EC 1.4.99.6), at 435,330 to 436,631
GFF1773
GFF1774 - Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system, at 436,760 to 437,227
GFF1774
GFF1775 - no description, at 437,224 to 437,718
GFF1775
Position (kb) 435
436
437 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 434.465 kb on + strand, within GFF1772 at 434.466 kb on - strand, within GFF1772 at 434.466 kb on - strand, within GFF1772 at 434.491 kb on + strand, within GFF1772 at 434.491 kb on + strand, within GFF1772 at 434.502 kb on - strand, within GFF1772 at 434.546 kb on + strand, within GFF1772 at 434.546 kb on + strand, within GFF1772 at 434.547 kb on - strand, within GFF1772 at 434.570 kb on + strand, within GFF1772 at 434.570 kb on + strand, within GFF1772 at 434.570 kb on + strand, within GFF1772 at 434.570 kb on + strand, within GFF1772 at 434.571 kb on - strand, within GFF1772 at 434.571 kb on - strand, within GFF1772 at 434.571 kb on - strand, within GFF1772 at 434.660 kb on + strand, within GFF1772 at 434.660 kb on + strand, within GFF1772 at 434.777 kb on + strand, within GFF1772 at 434.777 kb on + strand, within GFF1772 at 434.777 kb on + strand, within GFF1772 at 434.778 kb on - strand, within GFF1772 at 434.778 kb on - strand, within GFF1772 at 434.778 kb on - strand, within GFF1772 at 434.778 kb on - strand, within GFF1772 at 434.778 kb on - strand, within GFF1772 at 434.778 kb on - strand, within GFF1772 at 434.778 kb on - strand, within GFF1772 at 434.903 kb on + strand, within GFF1772 at 434.903 kb on + strand, within GFF1772 at 434.903 kb on + strand, within GFF1772 at 434.903 kb on + strand, within GFF1772 at 435.240 kb on + strand at 435.241 kb on - strand at 435.241 kb on - strand at 435.241 kb on - strand at 435.241 kb on - strand at 435.241 kb on - strand at 435.241 kb on - strand at 435.241 kb on - strand at 435.520 kb on + strand, within GFF1773 at 435.520 kb on + strand, within GFF1773 at 435.521 kb on - strand, within GFF1773 at 435.521 kb on - strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.736 kb on + strand, within GFF1773 at 435.737 kb on - strand, within GFF1773 at 435.737 kb on - strand, within GFF1773 at 435.737 kb on - strand, within GFF1773 at 435.737 kb on - strand, within GFF1773 at 435.737 kb on - strand, within GFF1773 at 435.817 kb on + strand, within GFF1773 at 435.818 kb on - strand, within GFF1773 at 435.862 kb on + strand, within GFF1773 at 435.862 kb on + strand, within GFF1773 at 435.863 kb on - strand, within GFF1773 at 435.883 kb on + strand, within GFF1773 at 435.883 kb on + strand, within GFF1773 at 435.884 kb on - strand, within GFF1773 at 436.141 kb on + strand, within GFF1773 at 436.141 kb on + strand, within GFF1773 at 436.141 kb on + strand, within GFF1773 at 436.142 kb on - strand, within GFF1773 at 436.164 kb on + strand, within GFF1773 at 436.243 kb on + strand, within GFF1773 at 436.243 kb on + strand, within GFF1773 at 436.243 kb on + strand, within GFF1773 at 436.244 kb on - strand, within GFF1773 at 436.244 kb on - strand, within GFF1773 at 436.291 kb on + strand, within GFF1773 at 436.292 kb on - strand, within GFF1773 at 436.292 kb on - strand, within GFF1773 at 436.330 kb on + strand, within GFF1773 at 436.330 kb on + strand, within GFF1773 at 436.331 kb on - strand, within GFF1773 at 436.480 kb on + strand, within GFF1773 at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.579 kb on + strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.580 kb on - strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.582 kb on + strand at 436.583 kb on - strand at 436.583 kb on - strand at 436.583 kb on - strand at 436.668 kb on + strand at 436.669 kb on - strand at 436.819 kb on + strand, within GFF1774 at 436.819 kb on + strand, within GFF1774 at 437.078 kb on + strand, within GFF1774 at 437.079 kb on - strand, within GFF1774 at 437.079 kb on - strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.174 kb on + strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.175 kb on - strand, within GFF1774 at 437.390 kb on - strand, within GFF1775 at 437.621 kb on - strand, within GFF1775 at 437.621 kb on - strand, within GFF1775
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 434,465 + GFF1772 0.24 +1.0 434,466 - GFF1772 0.24 -0.0 434,466 - GFF1772 0.24 -1.9 434,491 + GFF1772 0.26 +3.1 434,491 + GFF1772 0.26 +0.0 434,502 - GFF1772 0.27 +1.6 434,546 + GFF1772 0.31 +1.4 434,546 + GFF1772 0.31 -0.3 434,547 - GFF1772 0.31 +0.4 434,570 + GFF1772 0.34 -2.4 434,570 + GFF1772 0.34 -1.6 434,570 + GFF1772 0.34 -1.6 434,570 + GFF1772 0.34 +0.0 434,571 - GFF1772 0.34 -1.3 434,571 - GFF1772 0.34 -0.7 434,571 - GFF1772 0.34 -0.9 434,660 + GFF1772 0.42 -3.1 434,660 + GFF1772 0.42 +0.2 434,777 + GFF1772 0.53 -0.6 434,777 + GFF1772 0.53 -0.6 434,777 + GFF1772 0.53 -0.2 434,778 - GFF1772 0.53 +0.2 434,778 - GFF1772 0.53 -0.9 434,778 - GFF1772 0.53 -0.6 434,778 - GFF1772 0.53 +1.7 434,778 - GFF1772 0.53 -2.9 434,778 - GFF1772 0.53 -1.0 434,778 - GFF1772 0.53 -1.5 434,903 + GFF1772 0.64 -0.1 434,903 + GFF1772 0.64 -2.7 434,903 + GFF1772 0.64 -3.3 434,903 + GFF1772 0.64 -0.2 435,240 + -0.2 435,241 - +1.8 435,241 - -2.2 435,241 - -1.0 435,241 - +0.4 435,241 - -0.8 435,241 - +1.1 435,241 - +0.2 435,520 + GFF1773 0.15 -0.6 435,520 + GFF1773 0.15 -0.8 435,521 - GFF1773 0.15 -1.7 435,521 - GFF1773 0.15 -1.1 435,736 + GFF1773 0.31 -3.9 435,736 + GFF1773 0.31 -4.7 435,736 + GFF1773 0.31 -1.6 435,736 + GFF1773 0.31 -3.5 435,736 + GFF1773 0.31 -1.2 435,736 + GFF1773 0.31 -3.3 435,736 + GFF1773 0.31 -2.9 435,736 + GFF1773 0.31 -1.0 435,736 + GFF1773 0.31 -2.5 435,737 - GFF1773 0.31 -3.4 435,737 - GFF1773 0.31 -3.2 435,737 - GFF1773 0.31 -2.3 435,737 - GFF1773 0.31 -0.1 435,737 - GFF1773 0.31 -1.6 435,817 + GFF1773 0.37 +0.2 435,818 - GFF1773 0.37 -2.6 435,862 + GFF1773 0.41 -4.7 435,862 + GFF1773 0.41 -1.2 435,863 - GFF1773 0.41 -0.5 435,883 + GFF1773 0.42 -2.3 435,883 + GFF1773 0.42 -0.3 435,884 - GFF1773 0.43 -0.9 436,141 + GFF1773 0.62 +0.0 436,141 + GFF1773 0.62 -1.6 436,141 + GFF1773 0.62 -1.5 436,142 - GFF1773 0.62 -1.5 436,164 + GFF1773 0.64 -1.8 436,243 + GFF1773 0.70 -4.8 436,243 + GFF1773 0.70 -2.6 436,243 + GFF1773 0.70 -1.5 436,244 - GFF1773 0.70 -3.7 436,244 - GFF1773 0.70 -0.3 436,291 + GFF1773 0.74 -1.2 436,292 - GFF1773 0.74 -1.0 436,292 - GFF1773 0.74 -3.3 436,330 + GFF1773 0.77 -5.9 436,330 + GFF1773 0.77 -1.6 436,331 - GFF1773 0.77 -2.2 436,480 + GFF1773 0.88 -0.6 436,579 + -1.3 436,579 + -3.0 436,579 + -1.7 436,579 + -0.3 436,579 + -0.7 436,579 + -3.9 436,579 + -0.6 436,579 + -3.1 436,579 + -3.2 436,579 + -0.6 436,580 - -1.7 436,580 - -1.0 436,580 - -1.7 436,580 - -2.7 436,580 - -1.3 436,580 - -5.3 436,580 - -0.6 436,580 - +2.0 436,580 - -2.5 436,582 + -1.4 436,582 + -1.4 436,582 + -3.7 436,582 + -3.8 436,582 + -0.3 436,583 - -3.2 436,583 - -0.8 436,583 - -1.6 436,668 + -2.2 436,669 - +1.6 436,819 + GFF1774 0.13 -1.2 436,819 + GFF1774 0.13 -1.7 437,078 + GFF1774 0.68 -1.2 437,079 - GFF1774 0.68 -3.2 437,079 - GFF1774 0.68 +0.2 437,174 + GFF1774 0.88 -2.9 437,174 + GFF1774 0.88 -3.9 437,174 + GFF1774 0.88 -3.0 437,174 + GFF1774 0.88 -0.4 437,174 + GFF1774 0.88 -0.3 437,174 + GFF1774 0.88 +0.0 437,174 + GFF1774 0.88 -1.8 437,174 + GFF1774 0.88 -1.7 437,175 - GFF1774 0.89 +0.6 437,175 - GFF1774 0.89 +0.7 437,175 - GFF1774 0.89 +1.0 437,175 - GFF1774 0.89 -1.8 437,175 - GFF1774 0.89 -0.4 437,175 - GFF1774 0.89 -1.4 437,175 - GFF1774 0.89 -2.9 437,390 - GFF1775 0.34 +0.0 437,621 - GFF1775 0.80 -0.4 437,621 - GFF1775 0.80 -1.2
Or see this region's nucleotide sequence