Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1763 and GFF1764 overlap by 7 nucleotides GFF1764 and GFF1765 are separated by 88 nucleotides GFF1765 and GFF1766 overlap by 14 nucleotides
GFF1763 - HemK family modification methylase PA2179, at 425,124 to 426,077
GFF1763
GFF1764 - hypothetical protein, at 426,071 to 426,967
GFF1764
GFF1765 - putative membrane protein, at 427,056 to 428,234
GFF1765
GFF1766 - no description, at 428,221 to 429,402
GFF1766
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 426.268 kb on - strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.375 kb on + strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 426.382 kb on - strand, within GFF1764 at 427.044 kb on + strand at 427.045 kb on - strand at 427.045 kb on - strand at 427.888 kb on + strand, within GFF1765 at 427.888 kb on + strand, within GFF1765 at 428.128 kb on + strand at 428.129 kb on - strand at 428.630 kb on + strand, within GFF1766 at 428.631 kb on - strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.639 kb on + strand, within GFF1766 at 428.640 kb on - strand, within GFF1766 at 428.654 kb on + strand, within GFF1766 at 428.655 kb on - strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.879 kb on + strand, within GFF1766 at 428.880 kb on - strand, within GFF1766 at 428.934 kb on - strand, within GFF1766 at 429.146 kb on + strand, within GFF1766 at 429.147 kb on - strand, within GFF1766 at 429.182 kb on + strand, within GFF1766 at 429.183 kb on - strand, within GFF1766
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 426,268 - GFF1764 0.22 -2.2 426,375 + GFF1764 0.34 -2.5 426,375 + GFF1764 0.34 +0.5 426,382 - GFF1764 0.35 -0.6 426,382 - GFF1764 0.35 -1.0 427,044 + -0.8 427,045 - +1.0 427,045 - -1.6 427,888 + GFF1765 0.71 -2.8 427,888 + GFF1765 0.71 -2.1 428,128 + +2.8 428,129 - +0.0 428,630 + GFF1766 0.35 -2.8 428,631 - GFF1766 0.35 +0.0 428,639 + GFF1766 0.35 -2.2 428,639 + GFF1766 0.35 +1.5 428,640 - GFF1766 0.35 +0.0 428,654 + GFF1766 0.37 -2.4 428,655 - GFF1766 0.37 -0.5 428,879 + GFF1766 0.56 +0.4 428,879 + GFF1766 0.56 -0.4 428,879 + GFF1766 0.56 -3.3 428,879 + GFF1766 0.56 -0.6 428,879 + GFF1766 0.56 -2.2 428,879 + GFF1766 0.56 -3.0 428,880 - GFF1766 0.56 -1.9 428,934 - GFF1766 0.60 +0.5 429,146 + GFF1766 0.78 -1.3 429,147 - GFF1766 0.78 +0.7 429,182 + GFF1766 0.81 -1.6 429,183 - GFF1766 0.81 +1.1
Or see this region's nucleotide sequence