Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1739 and GFF1740 are separated by 9 nucleotides GFF1740 and GFF1741 are separated by 76 nucleotides
GFF1739 - Glutamate carboxypeptidase (EC 3.4.17.11), at 398,629 to 399,906
GFF1739
GFF1740 - Transcriptional regulator, LysR family, at 399,916 to 400,827
GFF1740
GFF1741 - UPF0324 inner membrane protein YeiH, at 400,904 to 401,956
GFF1741
Position (kb) 399
400
401 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 399.049 kb on + strand, within GFF1739 at 399.049 kb on + strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.050 kb on - strand, within GFF1739 at 399.119 kb on - strand, within GFF1739 at 399.119 kb on - strand, within GFF1739 at 399.157 kb on + strand, within GFF1739 at 399.694 kb on + strand, within GFF1739 at 399.695 kb on - strand, within GFF1739 at 399.695 kb on - strand, within GFF1739 at 399.862 kb on + strand at 399.862 kb on + strand at 399.863 kb on - strand at 400.476 kb on - strand, within GFF1740 at 400.500 kb on - strand, within GFF1740 at 400.514 kb on + strand, within GFF1740 at 400.515 kb on - strand, within GFF1740 at 400.891 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.907 kb on + strand at 400.908 kb on - strand at 400.908 kb on - strand at 400.908 kb on - strand at 401.268 kb on - strand, within GFF1741 at 401.268 kb on - strand, within GFF1741 at 401.447 kb on + strand, within GFF1741 at 401.448 kb on - strand, within GFF1741 at 401.465 kb on + strand, within GFF1741 at 401.465 kb on + strand, within GFF1741 at 401.465 kb on + strand, within GFF1741
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 399,049 + GFF1739 0.33 +2.1 399,049 + GFF1739 0.33 +0.4 399,050 - GFF1739 0.33 -0.6 399,050 - GFF1739 0.33 +0.2 399,050 - GFF1739 0.33 +2.0 399,050 - GFF1739 0.33 +0.9 399,119 - GFF1739 0.38 -1.2 399,119 - GFF1739 0.38 -0.6 399,157 + GFF1739 0.41 +1.2 399,694 + GFF1739 0.83 +0.1 399,695 - GFF1739 0.83 +0.4 399,695 - GFF1739 0.83 -0.8 399,862 + -3.4 399,862 + -2.6 399,863 - -1.8 400,476 - GFF1740 0.61 -2.0 400,500 - GFF1740 0.64 -0.1 400,514 + GFF1740 0.66 -0.6 400,515 - GFF1740 0.66 -0.1 400,891 + -2.4 400,907 + -2.4 400,907 + +0.2 400,907 + -1.9 400,907 + -0.9 400,907 + +0.2 400,907 + -0.8 400,908 - +2.7 400,908 - -1.3 400,908 - -2.6 401,268 - GFF1741 0.35 -1.2 401,268 - GFF1741 0.35 -0.5 401,447 + GFF1741 0.52 -1.5 401,448 - GFF1741 0.52 -1.2 401,465 + GFF1741 0.53 -0.6 401,465 + GFF1741 0.53 -0.8 401,465 + GFF1741 0.53 +1.3
Or see this region's nucleotide sequence