Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1696 and GFF1697 are separated by 196 nucleotides GFF1697 and GFF1698 are separated by 133 nucleotides
GFF1696 - Transcriptional regulator, LysR family, at 341,772 to 342,632
GFF1696
GFF1697 - Argininosuccinate lyase-like protein, at 342,829 to 344,352
GFF1697
GFF1698 - BUG/TctC family periplasmic protein, at 344,486 to 345,445
GFF1698
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 341.992 kb on + strand, within GFF1696 at 342.022 kb on + strand, within GFF1696 at 342.023 kb on - strand, within GFF1696 at 342.686 kb on + strand at 342.686 kb on + strand at 342.686 kb on + strand at 342.686 kb on + strand at 342.687 kb on - strand at 342.687 kb on - strand at 342.687 kb on - strand at 342.724 kb on - strand at 342.724 kb on - strand at 342.734 kb on + strand at 342.734 kb on + strand at 342.735 kb on - strand at 342.735 kb on - strand at 342.735 kb on - strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.736 kb on + strand at 342.737 kb on - strand at 342.737 kb on - strand at 342.737 kb on - strand at 342.737 kb on - strand at 342.737 kb on - strand at 342.829 kb on - strand at 342.829 kb on - strand at 342.829 kb on - strand at 342.829 kb on - strand at 342.829 kb on - strand at 342.901 kb on + strand at 342.901 kb on + strand at 342.902 kb on - strand at 343.117 kb on + strand, within GFF1697 at 343.117 kb on + strand, within GFF1697 at 343.117 kb on + strand, within GFF1697 at 343.117 kb on + strand, within GFF1697 at 343.117 kb on + strand, within GFF1697 at 343.118 kb on - strand, within GFF1697 at 343.118 kb on - strand, within GFF1697 at 343.207 kb on + strand, within GFF1697 at 343.207 kb on + strand, within GFF1697 at 343.208 kb on - strand, within GFF1697 at 343.208 kb on - strand, within GFF1697 at 343.309 kb on + strand, within GFF1697 at 343.309 kb on + strand, within GFF1697 at 343.309 kb on + strand, within GFF1697 at 343.309 kb on + strand, within GFF1697 at 343.309 kb on + strand, within GFF1697 at 343.310 kb on - strand, within GFF1697 at 343.351 kb on + strand, within GFF1697 at 343.351 kb on + strand, within GFF1697 at 343.351 kb on + strand, within GFF1697 at 343.351 kb on + strand, within GFF1697 at 343.352 kb on - strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.408 kb on + strand, within GFF1697 at 343.409 kb on - strand, within GFF1697 at 343.546 kb on + strand, within GFF1697 at 343.546 kb on + strand, within GFF1697 at 343.546 kb on + strand, within GFF1697 at 343.546 kb on + strand, within GFF1697 at 343.546 kb on + strand, within GFF1697 at 343.663 kb on + strand, within GFF1697 at 343.663 kb on + strand, within GFF1697 at 343.663 kb on + strand, within GFF1697 at 343.664 kb on - strand, within GFF1697 at 343.664 kb on - strand, within GFF1697 at 343.664 kb on - strand, within GFF1697 at 343.664 kb on - strand, within GFF1697 at 343.717 kb on + strand, within GFF1697 at 343.717 kb on + strand, within GFF1697 at 343.718 kb on - strand, within GFF1697 at 344.050 kb on + strand, within GFF1697 at 344.553 kb on - strand at 344.553 kb on - strand at 344.553 kb on - strand at 344.709 kb on - strand, within GFF1698 at 344.735 kb on + strand, within GFF1698 at 344.736 kb on - strand, within GFF1698 at 344.783 kb on + strand, within GFF1698 at 344.783 kb on + strand, within GFF1698 at 344.783 kb on + strand, within GFF1698 at 344.783 kb on + strand, within GFF1698 at 344.783 kb on + strand, within GFF1698 at 344.784 kb on - strand, within GFF1698 at 344.784 kb on - strand, within GFF1698 at 344.906 kb on + strand, within GFF1698 at 344.907 kb on - strand, within GFF1698 at 345.107 kb on + strand, within GFF1698 at 345.107 kb on + strand, within GFF1698 at 345.108 kb on - strand, within GFF1698 at 345.108 kb on - strand, within GFF1698 at 345.227 kb on + strand, within GFF1698 at 345.227 kb on + strand, within GFF1698 at 345.227 kb on + strand, within GFF1698 at 345.228 kb on - strand, within GFF1698 at 345.344 kb on + strand, within GFF1698 at 345.345 kb on - strand, within GFF1698
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 341,992 + GFF1696 0.26 +1.5 342,022 + GFF1696 0.29 +0.9 342,023 - GFF1696 0.29 -1.2 342,686 + -2.8 342,686 + -2.0 342,686 + +0.0 342,686 + +2.5 342,687 - +0.1 342,687 - +2.2 342,687 - +1.0 342,724 - +0.0 342,724 - +0.2 342,734 + -0.5 342,734 + -1.2 342,735 - +0.9 342,735 - -0.3 342,735 - +0.1 342,736 + -1.4 342,736 + +0.4 342,736 + +0.7 342,736 + +1.2 342,736 + +1.0 342,736 + -0.7 342,736 + -1.8 342,736 + -2.0 342,736 + -0.9 342,737 - +1.6 342,737 - -0.5 342,737 - -0.3 342,737 - -2.6 342,737 - -0.4 342,829 - -0.2 342,829 - -1.7 342,829 - -1.1 342,829 - -0.3 342,829 - +0.0 342,901 + -0.6 342,901 + +0.4 342,902 - +0.6 343,117 + GFF1697 0.19 +1.3 343,117 + GFF1697 0.19 -0.3 343,117 + GFF1697 0.19 -4.3 343,117 + GFF1697 0.19 +0.1 343,117 + GFF1697 0.19 -1.6 343,118 - GFF1697 0.19 +0.2 343,118 - GFF1697 0.19 -0.6 343,207 + GFF1697 0.25 -0.0 343,207 + GFF1697 0.25 +0.0 343,208 - GFF1697 0.25 -1.4 343,208 - GFF1697 0.25 +2.1 343,309 + GFF1697 0.31 -1.1 343,309 + GFF1697 0.31 -1.7 343,309 + GFF1697 0.31 -1.2 343,309 + GFF1697 0.31 -1.2 343,309 + GFF1697 0.31 -1.3 343,310 - GFF1697 0.32 -2.6 343,351 + GFF1697 0.34 -3.3 343,351 + GFF1697 0.34 -0.3 343,351 + GFF1697 0.34 +1.0 343,351 + GFF1697 0.34 -0.1 343,352 - GFF1697 0.34 +1.6 343,408 + GFF1697 0.38 +1.4 343,408 + GFF1697 0.38 -2.7 343,408 + GFF1697 0.38 -0.8 343,408 + GFF1697 0.38 +2.6 343,408 + GFF1697 0.38 -1.6 343,408 + GFF1697 0.38 -0.9 343,408 + GFF1697 0.38 +0.9 343,408 + GFF1697 0.38 +0.2 343,408 + GFF1697 0.38 -3.9 343,409 - GFF1697 0.38 -0.2 343,546 + GFF1697 0.47 -1.8 343,546 + GFF1697 0.47 -1.0 343,546 + GFF1697 0.47 -0.5 343,546 + GFF1697 0.47 +1.0 343,546 + GFF1697 0.47 +1.1 343,663 + GFF1697 0.55 -1.3 343,663 + GFF1697 0.55 -1.2 343,663 + GFF1697 0.55 -1.0 343,664 - GFF1697 0.55 +0.4 343,664 - GFF1697 0.55 -1.3 343,664 - GFF1697 0.55 +1.1 343,664 - GFF1697 0.55 -1.5 343,717 + GFF1697 0.58 -0.1 343,717 + GFF1697 0.58 -0.3 343,718 - GFF1697 0.58 +0.3 344,050 + GFF1697 0.80 -0.5 344,553 - +0.5 344,553 - -1.3 344,553 - +0.7 344,709 - GFF1698 0.23 -0.8 344,735 + GFF1698 0.26 -0.2 344,736 - GFF1698 0.26 -0.8 344,783 + GFF1698 0.31 -0.4 344,783 + GFF1698 0.31 -0.7 344,783 + GFF1698 0.31 -4.2 344,783 + GFF1698 0.31 -0.5 344,783 + GFF1698 0.31 +0.7 344,784 - GFF1698 0.31 +1.4 344,784 - GFF1698 0.31 -0.2 344,906 + GFF1698 0.44 +0.3 344,907 - GFF1698 0.44 +1.1 345,107 + GFF1698 0.65 -1.6 345,107 + GFF1698 0.65 -2.9 345,108 - GFF1698 0.65 +0.5 345,108 - GFF1698 0.65 -2.2 345,227 + GFF1698 0.77 +1.2 345,227 + GFF1698 0.77 +1.0 345,227 + GFF1698 0.77 -2.2 345,228 - GFF1698 0.77 +0.6 345,344 + GFF1698 0.89 +0.3 345,345 - GFF1698 0.89 +0.0
Or see this region's nucleotide sequence