Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1682 and GFF1683 overlap by 4 nucleotides GFF1683 and GFF1684 overlap by 4 nucleotides GFF1684 and GFF1685 are separated by 57 nucleotides
GFF1682 - 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33), at 326,900 to 328,300
GFF1682
GFF1683 - 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33), at 328,297 to 328,929
GFF1683
GFF1684 - no description, at 328,926 to 329,564
GFF1684
GFF1685 - BUG/TctC family periplasmic protein, at 329,622 to 330,620
GFF1685
Position (kb) 328
329
330 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 328.423 kb on + strand, within GFF1683 at 329.359 kb on - strand, within GFF1684 at 329.359 kb on - strand, within GFF1684 at 329.400 kb on + strand, within GFF1684 at 329.415 kb on + strand, within GFF1684 at 329.415 kb on + strand, within GFF1684 at 329.919 kb on + strand, within GFF1685 at 329.919 kb on + strand, within GFF1685 at 329.920 kb on - strand, within GFF1685 at 330.091 kb on - strand, within GFF1685 at 330.205 kb on - strand, within GFF1685 at 330.291 kb on + strand, within GFF1685 at 330.292 kb on - strand, within GFF1685 at 330.402 kb on - strand, within GFF1685
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 328,423 + GFF1683 0.20 -0.0 329,359 - GFF1684 0.68 -0.3 329,359 - GFF1684 0.68 -2.0 329,400 + GFF1684 0.74 +1.2 329,415 + GFF1684 0.77 -2.6 329,415 + GFF1684 0.77 -2.6 329,919 + GFF1685 0.30 +1.0 329,919 + GFF1685 0.30 -1.0 329,920 - GFF1685 0.30 -1.7 330,091 - GFF1685 0.47 +5.3 330,205 - GFF1685 0.58 -0.3 330,291 + GFF1685 0.67 -1.9 330,292 - GFF1685 0.67 +1.1 330,402 - GFF1685 0.78 +1.9
Or see this region's nucleotide sequence