Strain Fitness in Variovorax sp. SCN45 around GFF1594

Experiment: Community=guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1592 and GFF1593 are separated by 70 nucleotidesGFF1593 and GFF1594 overlap by 4 nucleotidesGFF1594 and GFF1595 are separated by 115 nucleotides GFF1592 - Response regulator/GGDEF/EAL domain protein, at 189,849 to 192,089 GFF1592 GFF1593 - no description, at 192,160 to 192,456 GFF1593 GFF1594 - Antitoxin DinJ (binds YafQ toxin), at 192,453 to 192,761 GFF1594 GFF1595 - Transcriptional regulator, AraC family, at 192,877 to 193,851 GFF1595 Position (kb) 192 193Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 191.767 kb on - strand, within GFF1592at 191.781 kb on + strand, within GFF1592at 191.782 kb on - strand, within GFF1592at 191.782 kb on - strand, within GFF1592at 191.782 kb on - strand, within GFF1592at 191.982 kb on + strandat 191.982 kb on + strandat 191.982 kb on + strandat 191.983 kb on - strandat 191.983 kb on - strandat 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.257 kb on + strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.258 kb on - strand, within GFF1593at 192.340 kb on + strand, within GFF1593at 192.340 kb on + strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.341 kb on - strand, within GFF1593at 192.409 kb on + strand, within GFF1593at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.677 kb on + strand, within GFF1594at 192.678 kb on - strand, within GFF1594at 192.798 kb on + strandat 192.892 kb on - strandat 192.892 kb on - strandat 192.892 kb on - strandat 192.892 kb on - strandat 193.001 kb on + strand, within GFF1595at 193.059 kb on + strand, within GFF1595at 193.060 kb on - strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.088 kb on + strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.089 kb on - strand, within GFF1595at 193.491 kb on - strand, within GFF1595at 193.491 kb on - strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.639 kb on + strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.640 kb on - strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.643 kb on + strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.644 kb on - strand, within GFF1595at 193.734 kb on - strand, within GFF1595

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=guar; Passage=4
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191,767 - GFF1592 0.86 +0.6
191,781 + GFF1592 0.86 +3.6
191,782 - GFF1592 0.86 +2.1
191,782 - GFF1592 0.86 +1.5
191,782 - GFF1592 0.86 -1.7
191,982 + -0.4
191,982 + -0.1
191,982 + -1.5
191,983 - -0.4
191,983 - -2.8
192,257 + GFF1593 0.33 +0.9
192,257 + GFF1593 0.33 +0.5
192,257 + GFF1593 0.33 +0.6
192,257 + GFF1593 0.33 -0.8
192,257 + GFF1593 0.33 +1.4
192,257 + GFF1593 0.33 -2.7
192,257 + GFF1593 0.33 +0.7
192,257 + GFF1593 0.33 +0.7
192,257 + GFF1593 0.33 +0.9
192,258 - GFF1593 0.33 -2.3
192,258 - GFF1593 0.33 -1.1
192,258 - GFF1593 0.33 -1.5
192,258 - GFF1593 0.33 -2.6
192,258 - GFF1593 0.33 -0.6
192,340 + GFF1593 0.61 -1.4
192,340 + GFF1593 0.61 -0.1
192,341 - GFF1593 0.61 -2.9
192,341 - GFF1593 0.61 -3.1
192,341 - GFF1593 0.61 -1.9
192,341 - GFF1593 0.61 +0.4
192,341 - GFF1593 0.61 +0.9
192,341 - GFF1593 0.61 -1.6
192,409 + GFF1593 0.84 +0.4
192,677 + GFF1594 0.72 -2.8
192,677 + GFF1594 0.72 -3.4
192,677 + GFF1594 0.72 -3.3
192,677 + GFF1594 0.72 -0.9
192,677 + GFF1594 0.72 +0.9
192,678 - GFF1594 0.73 -1.1
192,798 + +0.9
192,892 - -0.1
192,892 - -0.8
192,892 - -0.0
192,892 - +0.4
193,001 + GFF1595 0.13 +0.0
193,059 + GFF1595 0.19 -0.8
193,060 - GFF1595 0.19 -2.1
193,088 + GFF1595 0.22 -0.6
193,088 + GFF1595 0.22 +0.4
193,088 + GFF1595 0.22 -0.2
193,088 + GFF1595 0.22 -1.7
193,088 + GFF1595 0.22 -1.9
193,089 - GFF1595 0.22 +2.7
193,089 - GFF1595 0.22 +1.7
193,089 - GFF1595 0.22 +0.2
193,089 - GFF1595 0.22 +0.3
193,089 - GFF1595 0.22 -0.3
193,089 - GFF1595 0.22 -0.5
193,089 - GFF1595 0.22 +0.3
193,089 - GFF1595 0.22 -0.6
193,491 - GFF1595 0.63 -1.5
193,491 - GFF1595 0.63 -0.1
193,639 + GFF1595 0.78 +0.8
193,639 + GFF1595 0.78 -1.5
193,639 + GFF1595 0.78 +1.5
193,639 + GFF1595 0.78 -2.4
193,639 + GFF1595 0.78 -3.1
193,639 + GFF1595 0.78 +0.6
193,639 + GFF1595 0.78 +0.6
193,639 + GFF1595 0.78 -1.5
193,639 + GFF1595 0.78 +0.1
193,639 + GFF1595 0.78 -0.6
193,639 + GFF1595 0.78 +0.4
193,639 + GFF1595 0.78 -0.9
193,639 + GFF1595 0.78 -1.5
193,640 - GFF1595 0.78 -0.8
193,640 - GFF1595 0.78 -0.1
193,640 - GFF1595 0.78 +4.5
193,640 - GFF1595 0.78 -2.8
193,640 - GFF1595 0.78 -3.0
193,640 - GFF1595 0.78 +0.5
193,640 - GFF1595 0.78 +0.1
193,640 - GFF1595 0.78 +0.4
193,640 - GFF1595 0.78 -1.2
193,640 - GFF1595 0.78 +0.9
193,640 - GFF1595 0.78 +0.5
193,640 - GFF1595 0.78 -2.1
193,640 - GFF1595 0.78 -1.2
193,640 - GFF1595 0.78 +0.1
193,640 - GFF1595 0.78 -2.8
193,643 + GFF1595 0.79 -1.4
193,643 + GFF1595 0.79 -3.1
193,643 + GFF1595 0.79 +0.9
193,643 + GFF1595 0.79 +2.0
193,643 + GFF1595 0.79 +0.6
193,643 + GFF1595 0.79 +0.9
193,644 - GFF1595 0.79 -1.5
193,644 - GFF1595 0.79 +0.2
193,644 - GFF1595 0.79 -2.6
193,644 - GFF1595 0.79 -0.1
193,644 - GFF1595 0.79 -0.6
193,644 - GFF1595 0.79 -3.8
193,644 - GFF1595 0.79 +0.8
193,734 - GFF1595 0.88 -0.8

Or see this region's nucleotide sequence