Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1533 and GFF1534 are separated by 33 nucleotides GFF1534 and GFF1535 are separated by 115 nucleotides
GFF1533 - no description, at 131,070 to 131,960
GFF1533
GFF1534 - Transcriptional regulator, LysR family, at 131,994 to 132,896
GFF1534
GFF1535 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 133,012 to 133,917
GFF1535
Position (kb) 131
132
133 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 131.412 kb on + strand, within GFF1533 at 131.412 kb on + strand, within GFF1533 at 131.415 kb on + strand, within GFF1533 at 131.415 kb on + strand, within GFF1533 at 131.533 kb on - strand, within GFF1533 at 131.533 kb on - strand, within GFF1533 at 131.737 kb on - strand, within GFF1533 at 132.097 kb on + strand, within GFF1534 at 132.097 kb on + strand, within GFF1534 at 132.097 kb on + strand, within GFF1534 at 132.224 kb on - strand, within GFF1534 at 132.316 kb on + strand, within GFF1534 at 132.316 kb on + strand, within GFF1534 at 132.317 kb on - strand, within GFF1534 at 132.682 kb on + strand, within GFF1534 at 132.682 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.710 kb on + strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.711 kb on - strand, within GFF1534 at 132.908 kb on - strand at 132.972 kb on + strand at 132.998 kb on + strand at 132.998 kb on + strand at 132.999 kb on - strand at 132.999 kb on - strand at 132.999 kb on - strand at 132.999 kb on - strand at 132.999 kb on - strand at 133.264 kb on + strand, within GFF1535 at 133.265 kb on - strand, within GFF1535 at 133.265 kb on - strand, within GFF1535 at 133.823 kb on - strand, within GFF1535
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 131,412 + GFF1533 0.38 -0.7 131,412 + GFF1533 0.38 -0.1 131,415 + GFF1533 0.39 -0.9 131,415 + GFF1533 0.39 -2.3 131,533 - GFF1533 0.52 +1.8 131,533 - GFF1533 0.52 -0.7 131,737 - GFF1533 0.75 +0.8 132,097 + GFF1534 0.11 +0.2 132,097 + GFF1534 0.11 -3.0 132,097 + GFF1534 0.11 -0.9 132,224 - GFF1534 0.25 +0.6 132,316 + GFF1534 0.36 -0.0 132,316 + GFF1534 0.36 -2.0 132,317 - GFF1534 0.36 -2.9 132,682 + GFF1534 0.76 -0.2 132,682 + GFF1534 0.76 -1.7 132,710 + GFF1534 0.79 +1.1 132,710 + GFF1534 0.79 -0.3 132,710 + GFF1534 0.79 +0.2 132,711 - GFF1534 0.79 +1.1 132,711 - GFF1534 0.79 -1.4 132,711 - GFF1534 0.79 -0.3 132,711 - GFF1534 0.79 -2.3 132,908 - +0.3 132,972 + -0.1 132,998 + -3.3 132,998 + +0.4 132,999 - -2.7 132,999 - -3.0 132,999 - +1.0 132,999 - -2.8 132,999 - -2.6 133,264 + GFF1535 0.28 -0.4 133,265 - GFF1535 0.28 -1.8 133,265 - GFF1535 0.28 +0.7 133,823 - GFF1535 0.90 +2.1
Or see this region's nucleotide sequence