Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1486 and GFF1487 overlap by 4 nucleotides GFF1487 and GFF1488 are separated by 39 nucleotides GFF1488 and GFF1489 overlap by 4 nucleotides
GFF1486 - Tetrapartite efflux system, inner membrane component FusBC-like, at 78,609 to 80,672
GFF1486
GFF1487 - Tetrapartite efflux system component, FusD-like, at 80,669 to 80,875
GFF1487
GFF1488 - Tetrapartite efflux system, membrane fusion component FusE-like, at 80,915 to 81,913
GFF1488
GFF1489 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 81,910 to 83,373
GFF1489
Position (kb) 80
81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 80.013 kb on + strand, within GFF1486 at 80.013 kb on + strand, within GFF1486 at 80.013 kb on + strand, within GFF1486 at 80.215 kb on + strand, within GFF1486 at 80.215 kb on + strand, within GFF1486 at 80.216 kb on - strand, within GFF1486 at 80.216 kb on - strand, within GFF1486 at 80.287 kb on - strand, within GFF1486 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.696 kb on + strand, within GFF1487 at 80.697 kb on - strand, within GFF1487 at 80.697 kb on - strand, within GFF1487 at 80.822 kb on + strand, within GFF1487 at 80.822 kb on + strand, within GFF1487 at 81.510 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.561 kb on - strand, within GFF1488 at 81.834 kb on + strand at 81.835 kb on - strand at 81.835 kb on - strand at 81.905 kb on - strand at 82.105 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.300 kb on + strand, within GFF1489 at 82.301 kb on - strand, within GFF1489 at 82.324 kb on + strand, within GFF1489 at 82.348 kb on + strand, within GFF1489 at 82.471 kb on + strand, within GFF1489 at 82.472 kb on - strand, within GFF1489
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 80,013 + GFF1486 0.68 +1.8 80,013 + GFF1486 0.68 -3.8 80,013 + GFF1486 0.68 -1.0 80,215 + GFF1486 0.78 -1.5 80,215 + GFF1486 0.78 +0.9 80,216 - GFF1486 0.78 +0.5 80,216 - GFF1486 0.78 +1.9 80,287 - GFF1486 0.81 -2.7 80,696 + GFF1487 0.13 -1.1 80,696 + GFF1487 0.13 -0.9 80,696 + GFF1487 0.13 +0.3 80,696 + GFF1487 0.13 -2.0 80,696 + GFF1487 0.13 -0.9 80,696 + GFF1487 0.13 -1.1 80,697 - GFF1487 0.14 -1.3 80,697 - GFF1487 0.14 +0.9 80,822 + GFF1487 0.74 -0.5 80,822 + GFF1487 0.74 -2.1 81,510 - GFF1488 0.60 -2.7 81,561 - GFF1488 0.65 +0.5 81,561 - GFF1488 0.65 +1.1 81,834 + +0.3 81,835 - -0.9 81,835 - +0.8 81,905 - -0.9 82,105 + GFF1489 0.13 -1.5 82,300 + GFF1489 0.27 +0.0 82,300 + GFF1489 0.27 -0.1 82,300 + GFF1489 0.27 -3.6 82,301 - GFF1489 0.27 -0.4 82,324 + GFF1489 0.28 -2.3 82,348 + GFF1489 0.30 +0.1 82,471 + GFF1489 0.38 -0.3 82,472 - GFF1489 0.38 -1.5
Or see this region's nucleotide sequence