Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1177 and GFF1178 are separated by 23 nucleotides GFF1178 and GFF1179 are separated by 6 nucleotides
GFF1177 - Serine protease, at 493,480 to 494,967
GFF1177
GFF1178 - hypothetical protein, at 494,991 to 495,332
GFF1178
GFF1179 - no description, at 495,339 to 497,222
GFF1179
Position (kb) 494
495
496 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.164 kb on + strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.165 kb on - strand, within GFF1177 at 494.264 kb on + strand, within GFF1177 at 494.265 kb on - strand, within GFF1177 at 494.265 kb on - strand, within GFF1177 at 494.265 kb on - strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.266 kb on + strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 494.267 kb on - strand, within GFF1177 at 495.214 kb on + strand, within GFF1178 at 495.216 kb on + strand, within GFF1178 at 495.405 kb on + strand at 495.406 kb on - strand at 495.453 kb on + strand at 495.772 kb on + strand, within GFF1179 at 495.772 kb on + strand, within GFF1179 at 495.772 kb on + strand, within GFF1179 at 495.772 kb on + strand, within GFF1179 at 495.773 kb on - strand, within GFF1179 at 495.773 kb on - strand, within GFF1179 at 495.773 kb on - strand, within GFF1179 at 495.773 kb on - strand, within GFF1179 at 496.048 kb on + strand, within GFF1179 at 496.049 kb on - strand, within GFF1179 at 496.049 kb on - strand, within GFF1179 at 496.049 kb on - strand, within GFF1179 at 496.069 kb on + strand, within GFF1179 at 496.069 kb on + strand, within GFF1179 at 496.077 kb on + strand, within GFF1179 at 496.077 kb on + strand, within GFF1179 at 496.135 kb on + strand, within GFF1179 at 496.136 kb on - strand, within GFF1179 at 496.136 kb on - strand, within GFF1179 at 496.194 kb on + strand, within GFF1179 at 496.194 kb on + strand, within GFF1179 at 496.195 kb on - strand, within GFF1179 at 496.195 kb on - strand, within GFF1179 at 496.195 kb on - strand, within GFF1179 at 496.258 kb on + strand, within GFF1179 at 496.267 kb on + strand, within GFF1179 at 496.267 kb on + strand, within GFF1179 at 496.267 kb on + strand, within GFF1179 at 496.267 kb on + strand, within GFF1179 at 496.267 kb on + strand, within GFF1179 at 496.267 kb on + strand, within GFF1179 at 496.268 kb on - strand, within GFF1179 at 496.268 kb on - strand, within GFF1179 at 496.268 kb on - strand, within GFF1179
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 494,164 + GFF1177 0.46 +1.6 494,164 + GFF1177 0.46 +1.5 494,164 + GFF1177 0.46 -2.1 494,164 + GFF1177 0.46 +2.4 494,164 + GFF1177 0.46 -0.5 494,164 + GFF1177 0.46 +0.8 494,164 + GFF1177 0.46 -0.0 494,164 + GFF1177 0.46 -0.0 494,164 + GFF1177 0.46 -0.4 494,164 + GFF1177 0.46 +1.0 494,164 + GFF1177 0.46 -0.0 494,164 + GFF1177 0.46 -1.9 494,164 + GFF1177 0.46 +1.1 494,164 + GFF1177 0.46 -1.2 494,165 - GFF1177 0.46 +1.0 494,165 - GFF1177 0.46 +0.2 494,165 - GFF1177 0.46 -0.0 494,165 - GFF1177 0.46 -0.8 494,165 - GFF1177 0.46 -1.9 494,165 - GFF1177 0.46 +0.2 494,264 + GFF1177 0.53 +3.3 494,265 - GFF1177 0.53 +0.8 494,265 - GFF1177 0.53 -2.5 494,265 - GFF1177 0.53 -0.2 494,266 + GFF1177 0.53 -1.4 494,266 + GFF1177 0.53 +0.5 494,266 + GFF1177 0.53 -1.2 494,266 + GFF1177 0.53 -0.0 494,266 + GFF1177 0.53 +0.9 494,267 - GFF1177 0.53 -1.5 494,267 - GFF1177 0.53 -1.2 494,267 - GFF1177 0.53 -1.2 494,267 - GFF1177 0.53 -1.2 494,267 - GFF1177 0.53 +1.3 495,214 + GFF1178 0.65 +2.4 495,216 + GFF1178 0.66 +0.0 495,405 + -2.2 495,406 - -3.6 495,453 + -0.0 495,772 + GFF1179 0.23 +0.1 495,772 + GFF1179 0.23 -1.0 495,772 + GFF1179 0.23 -2.1 495,772 + GFF1179 0.23 -0.4 495,773 - GFF1179 0.23 +3.3 495,773 - GFF1179 0.23 -1.0 495,773 - GFF1179 0.23 -2.3 495,773 - GFF1179 0.23 -2.7 496,048 + GFF1179 0.38 -2.0 496,049 - GFF1179 0.38 -0.2 496,049 - GFF1179 0.38 -1.9 496,049 - GFF1179 0.38 -0.8 496,069 + GFF1179 0.39 -0.8 496,069 + GFF1179 0.39 +0.4 496,077 + GFF1179 0.39 -2.4 496,077 + GFF1179 0.39 -3.9 496,135 + GFF1179 0.42 -2.3 496,136 - GFF1179 0.42 -0.0 496,136 - GFF1179 0.42 -2.1 496,194 + GFF1179 0.45 +1.0 496,194 + GFF1179 0.45 -2.1 496,195 - GFF1179 0.45 +0.4 496,195 - GFF1179 0.45 -0.8 496,195 - GFF1179 0.45 +0.8 496,258 + GFF1179 0.49 +0.6 496,267 + GFF1179 0.49 -0.3 496,267 + GFF1179 0.49 -2.6 496,267 + GFF1179 0.49 +0.1 496,267 + GFF1179 0.49 +0.6 496,267 + GFF1179 0.49 +0.1 496,267 + GFF1179 0.49 -0.4 496,268 - GFF1179 0.49 -0.6 496,268 - GFF1179 0.49 -0.0 496,268 - GFF1179 0.49 -2.3
Or see this region's nucleotide sequence