Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1142 and GFF1143 are separated by 3 nucleotides GFF1143 and GFF1144 are separated by 38 nucleotides GFF1144 and GFF1145 are separated by 48 nucleotides GFF1145 and GFF1146 are separated by 1 nucleotides
GFF1142 - Efflux transport system, outer membrane factor (OMF) lipoprotein, at 457,586 to 459,019
GFF1142
GFF1143 - no description, at 459,023 to 459,760
GFF1143
GFF1144 - hypothetical protein, at 459,799 to 461,700
GFF1144
GFF1145 - hypothetical protein, at 461,749 to 462,117
GFF1145
GFF1146 - Pyrophosphate-energized proton pump (EC 3.6.1.1), at 462,119 to 464,635
GFF1146
Position (kb) 459
460
461
462 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 459.304 kb on + strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.305 kb on - strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.597 kb on + strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.598 kb on - strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.651 kb on + strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.652 kb on - strand, within GFF1143 at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.772 kb on + strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.773 kb on - strand at 459.777 kb on + strand at 459.777 kb on + strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.778 kb on - strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.821 kb on + strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.822 kb on - strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.835 kb on + strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.836 kb on - strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.961 kb on + strand at 459.962 kb on - strand at 459.962 kb on - strand at 459.962 kb on - strand at 460.331 kb on + strand, within GFF1144 at 460.331 kb on + strand, within GFF1144 at 460.331 kb on + strand, within GFF1144 at 460.477 kb on - strand, within GFF1144 at 461.063 kb on + strand, within GFF1144 at 461.063 kb on + strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.064 kb on - strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.255 kb on + strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.256 kb on - strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.276 kb on + strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.277 kb on - strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.483 kb on + strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.484 kb on - strand, within GFF1144 at 461.564 kb on + strand at 461.564 kb on + strand at 461.564 kb on + strand at 461.565 kb on - strand at 461.565 kb on - strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.576 kb on + strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.577 kb on - strand at 461.693 kb on + strand at 461.694 kb on - strand at 461.694 kb on - strand at 461.777 kb on + strand at 461.777 kb on + strand at 461.778 kb on - strand at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.038 kb on + strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.039 kb on - strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.041 kb on + strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.042 kb on - strand, within GFF1145 at 462.128 kb on + strand at 462.128 kb on + strand at 462.129 kb on - strand at 462.129 kb on - strand at 462.129 kb on - strand at 462.129 kb on - strand at 462.408 kb on + strand, within GFF1146 at 462.408 kb on + strand, within GFF1146 at 462.408 kb on + strand, within GFF1146 at 462.409 kb on - strand, within GFF1146 at 462.669 kb on + strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146 at 462.670 kb on - strand, within GFF1146
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 459,304 + GFF1143 0.38 -1.6 459,305 - GFF1143 0.38 +0.1 459,305 - GFF1143 0.38 -0.4 459,305 - GFF1143 0.38 -0.6 459,305 - GFF1143 0.38 -2.7 459,597 + GFF1143 0.78 -0.3 459,597 + GFF1143 0.78 +1.3 459,597 + GFF1143 0.78 -0.1 459,598 - GFF1143 0.78 +0.6 459,598 - GFF1143 0.78 -0.3 459,598 - GFF1143 0.78 -2.3 459,598 - GFF1143 0.78 +1.0 459,651 + GFF1143 0.85 +0.8 459,651 + GFF1143 0.85 -2.0 459,651 + GFF1143 0.85 -0.1 459,651 + GFF1143 0.85 -0.4 459,651 + GFF1143 0.85 -1.6 459,651 + GFF1143 0.85 +0.7 459,651 + GFF1143 0.85 -0.5 459,652 - GFF1143 0.85 +0.8 459,652 - GFF1143 0.85 -0.0 459,652 - GFF1143 0.85 +2.1 459,772 + +2.0 459,772 + -1.4 459,772 + -0.2 459,772 + +1.8 459,772 + -0.0 459,772 + -3.0 459,772 + -1.4 459,772 + +0.6 459,773 - -3.4 459,773 - -1.6 459,773 - +1.7 459,773 - -1.5 459,773 - -2.8 459,773 - +1.5 459,773 - +0.5 459,773 - +0.8 459,773 - -1.4 459,773 - +0.5 459,777 + -1.4 459,777 + -2.5 459,778 - -3.0 459,778 - -0.4 459,778 - -2.7 459,778 - -1.0 459,821 + +2.3 459,821 + -0.2 459,821 + -1.0 459,822 - -1.4 459,822 - +0.5 459,822 - -1.9 459,822 - +1.9 459,822 - -0.6 459,822 - -0.1 459,835 + -1.2 459,835 + -1.9 459,835 + -0.0 459,835 + -2.0 459,835 + -1.2 459,836 - -0.6 459,836 - +0.1 459,836 - +0.5 459,836 - -3.7 459,836 - +0.9 459,836 - -0.4 459,836 - +0.8 459,961 + -2.2 459,961 + +0.7 459,961 + +0.9 459,962 - -0.4 459,962 - -0.8 459,962 - +0.4 460,331 + GFF1144 0.28 +1.3 460,331 + GFF1144 0.28 -1.0 460,331 + GFF1144 0.28 +0.6 460,477 - GFF1144 0.36 -2.5 461,063 + GFF1144 0.66 +1.0 461,063 + GFF1144 0.66 +4.4 461,064 - GFF1144 0.67 +1.4 461,064 - GFF1144 0.67 -0.1 461,064 - GFF1144 0.67 -2.6 461,064 - GFF1144 0.67 +1.8 461,064 - GFF1144 0.67 -2.5 461,064 - GFF1144 0.67 +0.5 461,255 + GFF1144 0.77 -1.3 461,255 + GFF1144 0.77 -0.3 461,255 + GFF1144 0.77 -1.2 461,255 + GFF1144 0.77 +0.4 461,255 + GFF1144 0.77 +0.6 461,255 + GFF1144 0.77 -2.2 461,255 + GFF1144 0.77 -3.4 461,255 + GFF1144 0.77 +1.8 461,255 + GFF1144 0.77 -2.5 461,256 - GFF1144 0.77 +1.4 461,256 - GFF1144 0.77 -0.0 461,256 - GFF1144 0.77 +0.2 461,256 - GFF1144 0.77 -2.2 461,256 - GFF1144 0.77 +1.2 461,256 - GFF1144 0.77 -3.0 461,256 - GFF1144 0.77 +1.4 461,256 - GFF1144 0.77 -0.4 461,256 - GFF1144 0.77 +0.3 461,256 - GFF1144 0.77 -0.6 461,256 - GFF1144 0.77 -0.4 461,276 + GFF1144 0.78 -0.4 461,276 + GFF1144 0.78 -0.5 461,276 + GFF1144 0.78 -0.8 461,276 + GFF1144 0.78 -0.9 461,277 - GFF1144 0.78 -1.9 461,277 - GFF1144 0.78 +1.6 461,277 - GFF1144 0.78 -2.8 461,277 - GFF1144 0.78 -0.8 461,277 - GFF1144 0.78 +0.8 461,483 + GFF1144 0.89 -1.9 461,483 + GFF1144 0.89 +0.0 461,483 + GFF1144 0.89 -3.2 461,483 + GFF1144 0.89 -0.3 461,483 + GFF1144 0.89 -2.9 461,483 + GFF1144 0.89 +1.2 461,483 + GFF1144 0.89 +0.3 461,483 + GFF1144 0.89 +0.2 461,483 + GFF1144 0.89 -0.7 461,483 + GFF1144 0.89 -1.2 461,483 + GFF1144 0.89 -2.3 461,484 - GFF1144 0.89 +0.2 461,484 - GFF1144 0.89 +1.8 461,484 - GFF1144 0.89 +2.7 461,484 - GFF1144 0.89 +2.2 461,484 - GFF1144 0.89 -0.0 461,484 - GFF1144 0.89 +3.2 461,484 - GFF1144 0.89 -2.0 461,484 - GFF1144 0.89 +2.1 461,484 - GFF1144 0.89 +0.0 461,484 - GFF1144 0.89 +1.5 461,484 - GFF1144 0.89 -1.3 461,484 - GFF1144 0.89 -0.0 461,484 - GFF1144 0.89 +0.2 461,484 - GFF1144 0.89 +0.8 461,484 - GFF1144 0.89 +1.4 461,484 - GFF1144 0.89 -0.4 461,564 + -1.5 461,564 + +1.5 461,564 + +0.2 461,565 - -1.4 461,565 - -1.7 461,576 + -0.8 461,576 + -0.0 461,576 + -0.9 461,576 + -1.8 461,576 + +0.1 461,577 - -1.6 461,577 - -0.0 461,577 - +0.2 461,577 - +2.1 461,577 - -2.7 461,577 - -1.8 461,693 + +3.2 461,694 - -4.8 461,694 - -0.9 461,777 + +0.6 461,777 + -0.8 461,778 - -3.2 462,038 + GFF1145 0.78 -3.6 462,038 + GFF1145 0.78 +0.8 462,038 + GFF1145 0.78 +0.4 462,038 + GFF1145 0.78 -1.0 462,038 + GFF1145 0.78 -0.8 462,038 + GFF1145 0.78 -0.2 462,038 + GFF1145 0.78 -2.3 462,038 + GFF1145 0.78 -1.2 462,038 + GFF1145 0.78 +0.6 462,039 - GFF1145 0.79 +0.6 462,039 - GFF1145 0.79 +1.4 462,039 - GFF1145 0.79 +1.3 462,039 - GFF1145 0.79 +1.3 462,039 - GFF1145 0.79 -0.3 462,039 - GFF1145 0.79 -0.4 462,041 + GFF1145 0.79 +1.7 462,041 + GFF1145 0.79 -0.8 462,041 + GFF1145 0.79 +0.4 462,041 + GFF1145 0.79 -2.1 462,041 + GFF1145 0.79 -0.8 462,041 + GFF1145 0.79 +1.1 462,041 + GFF1145 0.79 -0.7 462,041 + GFF1145 0.79 +1.6 462,042 - GFF1145 0.79 +0.7 462,042 - GFF1145 0.79 -4.3 462,042 - GFF1145 0.79 +0.6 462,042 - GFF1145 0.79 +0.8 462,042 - GFF1145 0.79 -0.7 462,042 - GFF1145 0.79 +0.3 462,128 + -1.8 462,128 + +0.7 462,129 - -0.4 462,129 - +1.0 462,129 - -0.0 462,129 - +0.3 462,408 + GFF1146 0.11 +2.8 462,408 + GFF1146 0.11 -0.0 462,408 + GFF1146 0.11 -2.5 462,409 - GFF1146 0.12 +0.3 462,669 + GFF1146 0.22 +3.0 462,670 - GFF1146 0.22 -1.3 462,670 - GFF1146 0.22 +0.2 462,670 - GFF1146 0.22 -1.6 462,670 - GFF1146 0.22 +0.4 462,670 - GFF1146 0.22 -0.0
Or see this region's nucleotide sequence