Experiment: Community=guar; Passage=4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1036 and GFF1037 are separated by 405 nucleotides GFF1037 and GFF1038 are separated by 37 nucleotides GFF1038 and GFF1039 are separated by 15 nucleotides
GFF1036 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 352,041 to 354,008
GFF1036
GFF1037 - putative membrane protein, at 354,414 to 355,331
GFF1037
GFF1038 - hypothetical protein, at 355,369 to 356,274
GFF1038
GFF1039 - Far-related protein, at 356,290 to 357,171
GFF1039
Position (kb) 354
355
356 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.472 kb on + strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.473 kb on - strand, within GFF1036 at 353.479 kb on - strand, within GFF1036 at 353.479 kb on - strand, within GFF1036 at 353.581 kb on + strand, within GFF1036 at 353.779 kb on + strand, within GFF1036 at 353.857 kb on + strand at 353.857 kb on + strand at 353.858 kb on - strand at 353.858 kb on - strand at 353.923 kb on - strand at 353.993 kb on + strand at 353.994 kb on - strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.009 kb on + strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.010 kb on - strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.072 kb on + strand at 354.073 kb on - strand at 354.073 kb on - strand at 354.073 kb on - strand at 354.073 kb on - strand at 354.126 kb on + strand at 354.126 kb on + strand at 354.127 kb on - strand at 354.127 kb on - strand at 354.127 kb on - strand at 354.127 kb on - strand at 354.127 kb on - strand at 354.127 kb on - strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.217 kb on + strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.218 kb on - strand at 354.239 kb on + strand at 354.240 kb on - strand at 354.240 kb on - strand at 354.286 kb on - strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.329 kb on - strand at 354.329 kb on - strand at 354.329 kb on - strand at 354.789 kb on + strand, within GFF1037 at 354.790 kb on - strand, within GFF1037 at 354.790 kb on - strand, within GFF1037 at 354.936 kb on + strand, within GFF1037 at 354.936 kb on + strand, within GFF1037 at 355.098 kb on + strand, within GFF1037 at 355.098 kb on + strand, within GFF1037 at 355.098 kb on + strand, within GFF1037 at 355.098 kb on + strand, within GFF1037 at 355.098 kb on + strand, within GFF1037 at 355.128 kb on + strand, within GFF1037 at 355.129 kb on - strand, within GFF1037 at 355.129 kb on - strand, within GFF1037 at 355.129 kb on - strand, within GFF1037 at 355.184 kb on + strand, within GFF1037 at 355.184 kb on + strand, within GFF1037 at 355.184 kb on + strand, within GFF1037 at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.355 kb on + strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.356 kb on - strand at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.594 kb on + strand, within GFF1038 at 355.595 kb on - strand, within GFF1038 at 355.595 kb on - strand, within GFF1038 at 355.595 kb on - strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.738 kb on + strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.739 kb on - strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.873 kb on + strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.874 kb on - strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.933 kb on + strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.934 kb on - strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.939 kb on + strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.940 kb on - strand, within GFF1038 at 355.978 kb on + strand, within GFF1038 at 355.978 kb on + strand, within GFF1038 at 355.978 kb on + strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 355.979 kb on - strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.050 kb on + strand, within GFF1038 at 356.051 kb on - strand, within GFF1038 at 356.051 kb on - strand, within GFF1038 at 356.051 kb on - strand, within GFF1038 at 356.095 kb on + strand, within GFF1038 at 356.095 kb on + strand, within GFF1038 at 356.095 kb on + strand, within GFF1038 at 356.096 kb on - strand, within GFF1038 at 356.096 kb on - strand, within GFF1038 at 356.096 kb on - strand, within GFF1038 at 356.116 kb on + strand, within GFF1038 at 356.116 kb on + strand, within GFF1038 at 356.116 kb on + strand, within GFF1038 at 356.117 kb on - strand, within GFF1038 at 356.117 kb on - strand, within GFF1038 at 356.117 kb on - strand, within GFF1038 at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.221 kb on + strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand at 356.222 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Community=guar; Passage=4 remove 353,472 + GFF1036 0.73 -4.3 353,472 + GFF1036 0.73 +0.2 353,472 + GFF1036 0.73 -1.4 353,472 + GFF1036 0.73 -0.3 353,472 + GFF1036 0.73 -1.0 353,472 + GFF1036 0.73 -2.4 353,472 + GFF1036 0.73 +1.8 353,472 + GFF1036 0.73 -0.7 353,472 + GFF1036 0.73 +1.8 353,472 + GFF1036 0.73 +2.7 353,472 + GFF1036 0.73 -4.5 353,472 + GFF1036 0.73 -0.4 353,472 + GFF1036 0.73 -1.1 353,472 + GFF1036 0.73 -1.7 353,473 - GFF1036 0.73 -2.6 353,473 - GFF1036 0.73 +0.5 353,473 - GFF1036 0.73 -2.5 353,473 - GFF1036 0.73 -2.1 353,473 - GFF1036 0.73 -0.4 353,473 - GFF1036 0.73 +1.4 353,473 - GFF1036 0.73 -0.3 353,473 - GFF1036 0.73 +0.4 353,479 - GFF1036 0.73 -0.0 353,479 - GFF1036 0.73 -0.2 353,581 + GFF1036 0.78 -2.7 353,779 + GFF1036 0.88 -0.6 353,857 + +1.2 353,857 + -2.5 353,858 - -1.0 353,858 - -0.1 353,923 - -1.6 353,993 + -1.0 353,994 - -1.3 354,009 + -1.0 354,009 + -0.7 354,009 + -2.1 354,009 + +1.8 354,009 + +0.3 354,009 + -0.4 354,009 + -0.2 354,009 + +0.5 354,009 + +0.2 354,009 + -0.4 354,010 - -2.3 354,010 - -0.7 354,010 - -1.7 354,010 - +0.3 354,010 - -0.7 354,010 - -1.0 354,010 - -1.4 354,010 - +0.0 354,010 - +1.1 354,072 + +0.0 354,072 + +0.4 354,072 + -1.2 354,072 + -3.2 354,072 + -1.1 354,072 + -0.7 354,072 + -0.9 354,072 + +1.6 354,072 + -2.0 354,073 - -1.1 354,073 - -1.7 354,073 - -2.0 354,073 - -1.0 354,126 + +1.6 354,126 + +1.9 354,127 - -0.1 354,127 - -0.4 354,127 - -0.4 354,127 - -1.0 354,127 - +0.6 354,127 - -1.4 354,217 + -3.0 354,217 + +1.1 354,217 + -1.4 354,217 + -1.0 354,217 + -1.4 354,217 + +2.0 354,217 + +1.8 354,217 + +2.3 354,217 + +0.4 354,217 + -0.4 354,217 + -0.5 354,217 + -0.6 354,217 + -1.7 354,217 + +0.0 354,217 + -0.4 354,217 + +1.6 354,217 + +1.0 354,217 + -1.4 354,217 + -3.0 354,217 + -0.2 354,217 + -0.1 354,217 + +1.3 354,218 - -2.1 354,218 - -2.0 354,218 - -1.0 354,218 - +1.2 354,218 - -1.9 354,218 - +0.7 354,218 - +0.3 354,218 - +1.1 354,218 - -3.0 354,218 - -0.9 354,218 - -1.4 354,218 - -2.4 354,218 - +0.0 354,218 - -0.9 354,218 - -1.4 354,218 - +1.6 354,218 - -0.7 354,218 - +2.0 354,218 - -2.0 354,239 + +0.5 354,240 - -0.2 354,240 - -2.7 354,286 - +0.9 354,328 + -2.0 354,328 + -2.1 354,328 + +1.9 354,328 + -0.4 354,328 + +0.0 354,329 - -0.2 354,329 - -2.1 354,329 - -0.3 354,789 + GFF1037 0.41 -0.9 354,790 - GFF1037 0.41 +3.2 354,790 - GFF1037 0.41 +1.2 354,936 + GFF1037 0.57 -0.7 354,936 + GFF1037 0.57 -1.7 355,098 + GFF1037 0.75 +2.0 355,098 + GFF1037 0.75 +0.1 355,098 + GFF1037 0.75 -0.6 355,098 + GFF1037 0.75 +0.2 355,098 + GFF1037 0.75 +0.8 355,128 + GFF1037 0.78 +0.6 355,129 - GFF1037 0.78 +1.1 355,129 - GFF1037 0.78 -1.0 355,129 - GFF1037 0.78 -0.7 355,184 + GFF1037 0.84 -1.3 355,184 + GFF1037 0.84 +1.5 355,184 + GFF1037 0.84 -1.5 355,355 + -1.2 355,355 + +0.3 355,355 + -0.1 355,355 + -0.1 355,355 + -1.0 355,355 + -1.2 355,355 + +0.3 355,355 + -1.0 355,355 + -2.4 355,355 + +0.2 355,355 + -1.6 355,355 + +1.1 355,355 + +2.3 355,355 + +0.7 355,355 + -1.0 355,355 + -2.3 355,356 - -1.9 355,356 - +0.2 355,356 - +0.6 355,356 - +1.1 355,356 - +1.6 355,356 - -0.7 355,356 - +0.0 355,356 - +0.7 355,356 - +0.4 355,356 - -1.0 355,356 - +0.5 355,356 - -3.2 355,356 - -0.4 355,356 - -0.9 355,356 - -0.1 355,356 - +0.0 355,356 - +0.0 355,356 - +0.8 355,356 - -2.6 355,356 - +1.5 355,356 - -1.7 355,594 + GFF1038 0.25 +1.5 355,594 + GFF1038 0.25 +0.3 355,594 + GFF1038 0.25 -2.4 355,594 + GFF1038 0.25 +0.9 355,594 + GFF1038 0.25 -1.0 355,595 - GFF1038 0.25 -1.6 355,595 - GFF1038 0.25 +0.6 355,595 - GFF1038 0.25 +0.7 355,738 + GFF1038 0.41 +1.6 355,738 + GFF1038 0.41 -0.0 355,738 + GFF1038 0.41 +1.8 355,738 + GFF1038 0.41 -3.3 355,738 + GFF1038 0.41 +0.0 355,738 + GFF1038 0.41 -3.3 355,738 + GFF1038 0.41 -0.8 355,739 - GFF1038 0.41 -3.3 355,739 - GFF1038 0.41 -1.4 355,739 - GFF1038 0.41 -1.7 355,739 - GFF1038 0.41 -3.6 355,739 - GFF1038 0.41 +1.5 355,739 - GFF1038 0.41 +1.6 355,739 - GFF1038 0.41 +0.0 355,873 + GFF1038 0.56 -1.0 355,873 + GFF1038 0.56 -1.2 355,873 + GFF1038 0.56 -4.1 355,873 + GFF1038 0.56 +0.6 355,873 + GFF1038 0.56 -0.4 355,873 + GFF1038 0.56 -1.4 355,873 + GFF1038 0.56 +0.6 355,873 + GFF1038 0.56 +1.2 355,873 + GFF1038 0.56 -0.7 355,873 + GFF1038 0.56 +2.0 355,873 + GFF1038 0.56 -2.3 355,874 - GFF1038 0.56 +1.8 355,874 - GFF1038 0.56 -1.2 355,874 - GFF1038 0.56 -3.9 355,874 - GFF1038 0.56 +1.6 355,933 + GFF1038 0.62 +0.1 355,933 + GFF1038 0.62 -0.3 355,933 + GFF1038 0.62 +0.5 355,933 + GFF1038 0.62 +1.9 355,933 + GFF1038 0.62 -0.7 355,933 + GFF1038 0.62 +2.8 355,933 + GFF1038 0.62 -0.7 355,933 + GFF1038 0.62 -3.2 355,933 + GFF1038 0.62 -1.2 355,933 + GFF1038 0.62 -1.5 355,933 + GFF1038 0.62 +0.4 355,934 - GFF1038 0.62 -0.7 355,934 - GFF1038 0.62 +0.9 355,934 - GFF1038 0.62 +0.7 355,934 - GFF1038 0.62 -1.6 355,934 - GFF1038 0.62 +0.6 355,934 - GFF1038 0.62 +0.0 355,934 - GFF1038 0.62 +0.9 355,939 + GFF1038 0.63 -1.7 355,939 + GFF1038 0.63 +0.0 355,939 + GFF1038 0.63 -3.0 355,939 + GFF1038 0.63 -1.9 355,939 + GFF1038 0.63 +0.6 355,939 + GFF1038 0.63 +0.2 355,939 + GFF1038 0.63 +2.0 355,940 - GFF1038 0.63 -1.2 355,940 - GFF1038 0.63 +0.5 355,940 - GFF1038 0.63 -1.9 355,940 - GFF1038 0.63 +1.9 355,940 - GFF1038 0.63 -1.0 355,940 - GFF1038 0.63 -1.9 355,940 - GFF1038 0.63 -1.3 355,940 - GFF1038 0.63 -0.5 355,940 - GFF1038 0.63 -1.3 355,940 - GFF1038 0.63 +0.8 355,940 - GFF1038 0.63 -2.8 355,978 + GFF1038 0.67 -0.4 355,978 + GFF1038 0.67 +0.7 355,978 + GFF1038 0.67 -1.4 355,979 - GFF1038 0.67 -0.3 355,979 - GFF1038 0.67 -0.5 355,979 - GFF1038 0.67 -3.5 355,979 - GFF1038 0.67 -0.2 356,050 + GFF1038 0.75 -1.0 356,050 + GFF1038 0.75 +0.0 356,050 + GFF1038 0.75 -2.2 356,050 + GFF1038 0.75 -0.4 356,050 + GFF1038 0.75 -0.3 356,051 - GFF1038 0.75 +0.1 356,051 - GFF1038 0.75 +0.5 356,051 - GFF1038 0.75 -1.2 356,095 + GFF1038 0.80 -1.8 356,095 + GFF1038 0.80 +0.6 356,095 + GFF1038 0.80 -0.2 356,096 - GFF1038 0.80 -1.9 356,096 - GFF1038 0.80 +1.5 356,096 - GFF1038 0.80 -1.7 356,116 + GFF1038 0.82 -1.9 356,116 + GFF1038 0.82 -2.2 356,116 + GFF1038 0.82 -0.8 356,117 - GFF1038 0.83 +2.3 356,117 - GFF1038 0.83 +0.5 356,117 - GFF1038 0.83 +0.0 356,221 + +0.5 356,221 + -0.1 356,221 + -1.2 356,221 + -0.0 356,221 + -2.2 356,221 + +2.0 356,221 + -2.1 356,221 + +0.7 356,221 + -1.8 356,221 + -0.6 356,221 + +0.5 356,222 - -1.0 356,222 - -3.4 356,222 - -0.4 356,222 - -0.1 356,222 - +0.5 356,222 - -0.3 356,222 - -0.7 356,222 - +1.0
Or see this region's nucleotide sequence