Strain Fitness in Variovorax sp. SCN45 around GFF895

Experiment: Community=arabino-guar; Passage=4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF893 and GFF894 are separated by 34 nucleotidesGFF894 and GFF895 are separated by 78 nucleotidesGFF895 and GFF896 are separated by 183 nucleotides GFF893 - FIG138928: iron-regulated membrane protein, at 203,172 to 204,857 GFF893 GFF894 - FIG024006: iron uptake protein, at 204,892 to 205,191 GFF894 GFF895 - Putative transcriptional regulatory protein, at 205,270 to 206,307 GFF895 GFF896 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 206,491 to 207,282 GFF896 Position (kb) 205 206 207Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 204.355 kb on + strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.356 kb on - strand, within GFF893at 204.388 kb on + strand, within GFF893at 204.388 kb on + strand, within GFF893at 204.389 kb on - strand, within GFF893at 204.389 kb on - strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.517 kb on + strand, within GFF893at 204.518 kb on - strand, within GFF893at 204.560 kb on - strand, within GFF893at 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.818 kb on + strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 204.819 kb on - strandat 205.034 kb on + strand, within GFF894at 205.034 kb on + strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.035 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.122 kb on - strand, within GFF894at 205.258 kb on + strandat 205.265 kb on + strandat 205.265 kb on + strandat 205.266 kb on - strandat 205.277 kb on - strandat 205.382 kb on + strand, within GFF895at 205.706 kb on + strand, within GFF895at 205.707 kb on - strand, within GFF895at 205.782 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.106 kb on - strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.114 kb on + strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.115 kb on - strand, within GFF895at 206.265 kb on - strandat 206.324 kb on - strandat 206.431 kb on - strandat 206.431 kb on - strandat 206.431 kb on - strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.435 kb on + strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.436 kb on - strandat 206.546 kb on + strandat 206.546 kb on + strandat 206.546 kb on + strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.547 kb on - strandat 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.764 kb on + strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.765 kb on - strand, within GFF896at 206.944 kb on + strand, within GFF896at 207.208 kb on + strandat 207.280 kb on + strandat 207.280 kb on + strandat 207.281 kb on - strandat 207.281 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
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204,355 + GFF893 0.70 -0.3
204,356 - GFF893 0.70 +0.2
204,356 - GFF893 0.70 -1.3
204,356 - GFF893 0.70 +0.4
204,388 + GFF893 0.72 -1.6
204,388 + GFF893 0.72 -1.6
204,389 - GFF893 0.72 +1.7
204,389 - GFF893 0.72 +1.1
204,517 + GFF893 0.80 +0.6
204,517 + GFF893 0.80 +0.6
204,517 + GFF893 0.80 -2.8
204,518 - GFF893 0.80 +0.2
204,560 - GFF893 0.82 +0.1
204,818 + +1.2
204,818 + -0.5
204,818 + -0.4
204,818 + +0.1
204,818 + -4.4
204,818 + -0.6
204,818 + +0.3
204,818 + -1.4
204,818 + -0.8
204,818 + -1.9
204,818 + +0.6
204,819 - +0.5
204,819 - -3.3
204,819 - +0.1
204,819 - +1.0
204,819 - +1.8
204,819 - -2.0
204,819 - -2.8
204,819 - -0.2
204,819 - +0.2
205,034 + GFF894 0.47 -0.1
205,034 + GFF894 0.47 +2.0
205,035 - GFF894 0.48 -2.0
205,035 - GFF894 0.48 -0.5
205,035 - GFF894 0.48 -1.3
205,122 - GFF894 0.77 -0.5
205,122 - GFF894 0.77 -2.5
205,122 - GFF894 0.77 -1.2
205,258 + -0.7
205,265 + -1.1
205,265 + -0.3
205,266 - -2.1
205,277 - +0.7
205,382 + GFF895 0.11 -2.4
205,706 + GFF895 0.42 +0.7
205,707 - GFF895 0.42 +0.8
205,782 - GFF895 0.49 +1.0
206,106 - GFF895 0.81 -1.9
206,106 - GFF895 0.81 -0.8
206,106 - GFF895 0.81 +0.5
206,114 + GFF895 0.81 +0.1
206,114 + GFF895 0.81 -1.3
206,114 + GFF895 0.81 -0.9
206,114 + GFF895 0.81 -1.8
206,114 + GFF895 0.81 +3.1
206,114 + GFF895 0.81 -1.8
206,114 + GFF895 0.81 -0.1
206,114 + GFF895 0.81 +0.3
206,114 + GFF895 0.81 +0.8
206,115 - GFF895 0.81 +1.3
206,115 - GFF895 0.81 -0.2
206,115 - GFF895 0.81 -0.2
206,115 - GFF895 0.81 +1.5
206,115 - GFF895 0.81 +0.0
206,115 - GFF895 0.81 +1.7
206,115 - GFF895 0.81 -3.2
206,115 - GFF895 0.81 -0.4
206,115 - GFF895 0.81 -0.5
206,115 - GFF895 0.81 -0.1
206,115 - GFF895 0.81 -2.0
206,265 - +0.4
206,324 - +0.9
206,431 - -1.9
206,431 - -0.5
206,431 - -0.2
206,435 + -1.1
206,435 + +1.5
206,435 + -0.8
206,435 + -1.2
206,435 + +0.2
206,435 + -1.5
206,435 + +0.6
206,435 + +0.5
206,435 + -0.9
206,435 + -0.5
206,435 + -1.3
206,435 + -1.8
206,436 - -2.1
206,436 - -1.3
206,436 - -0.5
206,436 - -0.8
206,436 - +1.5
206,436 - +1.9
206,436 - +0.8
206,436 - -2.4
206,436 - -2.1
206,436 - -2.7
206,436 - +1.5
206,546 + +3.2
206,546 + -0.2
206,546 + +1.6
206,547 - -3.6
206,547 - +0.2
206,547 - -1.8
206,547 - +0.2
206,547 - -0.4
206,764 + GFF896 0.34 -0.3
206,764 + GFF896 0.34 -1.1
206,764 + GFF896 0.34 -1.5
206,764 + GFF896 0.34 -2.8
206,765 - GFF896 0.35 -0.5
206,765 - GFF896 0.35 +0.6
206,765 - GFF896 0.35 -1.3
206,765 - GFF896 0.35 +0.4
206,765 - GFF896 0.35 +0.2
206,765 - GFF896 0.35 -1.1
206,765 - GFF896 0.35 +0.7
206,944 + GFF896 0.57 -0.8
207,208 + -1.9
207,280 + -2.2
207,280 + -1.0
207,281 - +0.3
207,281 - -0.8

Or see this region's nucleotide sequence