Strain Fitness in Variovorax sp. SCN45 around GFF889

Experiment: Community=arabino-guar; Passage=4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF888 and GFF889 are separated by 62 nucleotidesGFF889 and GFF890 are separated by 9 nucleotides GFF888 - BUG/TctC family periplasmic protein, at 197,114 to 198,079 GFF888 GFF889 - FIG00349738: hypothetical protein, at 198,142 to 200,244 GFF889 GFF890 - Two-component system sensor histidine kinase, at 200,254 to 202,221 GFF890 Position (kb) 198 199 200 201Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 197.370 kb on - strand, within GFF888at 197.567 kb on + strand, within GFF888at 197.568 kb on - strand, within GFF888at 197.568 kb on - strand, within GFF888at 197.654 kb on + strand, within GFF888at 197.654 kb on + strand, within GFF888at 197.655 kb on - strand, within GFF888at 197.841 kb on - strand, within GFF888at 197.852 kb on + strand, within GFF888at 197.867 kb on + strand, within GFF888at 197.868 kb on - strand, within GFF888at 197.960 kb on + strand, within GFF888at 197.960 kb on + strand, within GFF888at 197.960 kb on + strand, within GFF888at 197.960 kb on + strand, within GFF888at 197.961 kb on - strand, within GFF888at 197.961 kb on - strand, within GFF888at 198.078 kb on - strandat 198.078 kb on - strandat 198.078 kb on - strandat 198.307 kb on + strandat 198.307 kb on + strandat 198.308 kb on - strandat 198.308 kb on - strandat 198.368 kb on - strand, within GFF889at 198.478 kb on + strand, within GFF889at 198.478 kb on + strand, within GFF889at 198.478 kb on + strand, within GFF889at 198.478 kb on + strand, within GFF889at 198.479 kb on - strand, within GFF889at 198.479 kb on - strand, within GFF889at 198.479 kb on - strand, within GFF889at 198.479 kb on - strand, within GFF889at 198.541 kb on + strand, within GFF889at 198.601 kb on + strand, within GFF889at 198.601 kb on + strand, within GFF889at 198.602 kb on - strand, within GFF889at 198.602 kb on - strand, within GFF889at 198.712 kb on + strand, within GFF889at 198.797 kb on - strand, within GFF889at 198.797 kb on - strand, within GFF889at 198.832 kb on + strand, within GFF889at 198.833 kb on - strand, within GFF889at 198.982 kb on + strand, within GFF889at 198.989 kb on - strand, within GFF889at 198.989 kb on - strand, within GFF889at 198.989 kb on - strand, within GFF889at 198.989 kb on - strand, within GFF889at 198.989 kb on - strand, within GFF889at 199.000 kb on + strand, within GFF889at 199.357 kb on + strand, within GFF889at 199.357 kb on + strand, within GFF889at 199.358 kb on - strand, within GFF889at 199.358 kb on - strand, within GFF889at 199.358 kb on - strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.537 kb on + strand, within GFF889at 199.538 kb on - strand, within GFF889at 199.538 kb on - strand, within GFF889at 199.540 kb on + strand, within GFF889at 199.540 kb on + strand, within GFF889at 199.541 kb on - strand, within GFF889at 199.606 kb on + strand, within GFF889at 199.606 kb on + strand, within GFF889at 199.780 kb on + strand, within GFF889at 199.781 kb on - strand, within GFF889at 199.781 kb on - strand, within GFF889at 199.828 kb on + strand, within GFF889at 199.876 kb on + strand, within GFF889at 199.876 kb on + strand, within GFF889at 199.877 kb on - strand, within GFF889at 200.041 kb on + strandat 200.042 kb on - strandat 200.042 kb on - strandat 200.042 kb on - strandat 200.113 kb on + strandat 200.114 kb on - strandat 200.131 kb on + strandat 200.131 kb on + strandat 200.903 kb on + strand, within GFF890at 200.904 kb on - strand, within GFF890at 200.904 kb on - strand, within GFF890at 200.904 kb on - strand, within GFF890at 201.041 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.053 kb on + strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.054 kb on - strand, within GFF890at 201.099 kb on - strand, within GFF890at 201.099 kb on - strand, within GFF890at 201.215 kb on - strand, within GFF890

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Community=arabino-guar; Passage=4
remove
197,370 - GFF888 0.27 -0.8
197,567 + GFF888 0.47 +0.2
197,568 - GFF888 0.47 -2.1
197,568 - GFF888 0.47 -0.8
197,654 + GFF888 0.56 -2.2
197,654 + GFF888 0.56 -3.7
197,655 - GFF888 0.56 -1.0
197,841 - GFF888 0.75 -0.5
197,852 + GFF888 0.76 -0.8
197,867 + GFF888 0.78 -1.2
197,868 - GFF888 0.78 +0.5
197,960 + GFF888 0.88 -0.2
197,960 + GFF888 0.88 +0.9
197,960 + GFF888 0.88 -1.1
197,960 + GFF888 0.88 -1.2
197,961 - GFF888 0.88 +0.8
197,961 - GFF888 0.88 +0.0
198,078 - -1.3
198,078 - -1.9
198,078 - -1.5
198,307 + -1.9
198,307 + +0.8
198,308 - +0.5
198,308 - -2.0
198,368 - GFF889 0.11 -0.6
198,478 + GFF889 0.16 -1.4
198,478 + GFF889 0.16 -2.2
198,478 + GFF889 0.16 -0.5
198,478 + GFF889 0.16 +1.5
198,479 - GFF889 0.16 -0.7
198,479 - GFF889 0.16 +0.3
198,479 - GFF889 0.16 -1.2
198,479 - GFF889 0.16 -1.0
198,541 + GFF889 0.19 -0.2
198,601 + GFF889 0.22 +0.7
198,601 + GFF889 0.22 -1.2
198,602 - GFF889 0.22 -0.1
198,602 - GFF889 0.22 +2.8
198,712 + GFF889 0.27 -2.6
198,797 - GFF889 0.31 +1.5
198,797 - GFF889 0.31 -2.0
198,832 + GFF889 0.33 -0.5
198,833 - GFF889 0.33 +0.1
198,982 + GFF889 0.40 +0.4
198,989 - GFF889 0.40 -1.7
198,989 - GFF889 0.40 -0.4
198,989 - GFF889 0.40 -0.2
198,989 - GFF889 0.40 -0.2
198,989 - GFF889 0.40 -0.2
199,000 + GFF889 0.41 -1.6
199,357 + GFF889 0.58 -2.4
199,357 + GFF889 0.58 -0.2
199,358 - GFF889 0.58 +0.7
199,358 - GFF889 0.58 +0.8
199,358 - GFF889 0.58 -0.5
199,537 + GFF889 0.66 -0.4
199,537 + GFF889 0.66 +1.7
199,537 + GFF889 0.66 +0.1
199,537 + GFF889 0.66 -1.5
199,537 + GFF889 0.66 +0.2
199,537 + GFF889 0.66 +0.3
199,537 + GFF889 0.66 +0.8
199,537 + GFF889 0.66 -2.0
199,538 - GFF889 0.66 -0.5
199,538 - GFF889 0.66 -1.2
199,540 + GFF889 0.66 +2.1
199,540 + GFF889 0.66 -0.1
199,541 - GFF889 0.67 +0.3
199,606 + GFF889 0.70 +1.3
199,606 + GFF889 0.70 -0.7
199,780 + GFF889 0.78 +1.2
199,781 - GFF889 0.78 +1.4
199,781 - GFF889 0.78 -0.1
199,828 + GFF889 0.80 -0.6
199,876 + GFF889 0.82 +1.0
199,876 + GFF889 0.82 -3.1
199,877 - GFF889 0.83 -2.6
200,041 + +1.5
200,042 - -0.2
200,042 - -2.2
200,042 - +1.5
200,113 + +1.8
200,114 - +0.8
200,131 + -0.1
200,131 + +0.2
200,903 + GFF890 0.33 -1.5
200,904 - GFF890 0.33 -0.8
200,904 - GFF890 0.33 -0.9
200,904 - GFF890 0.33 +0.4
201,041 + GFF890 0.40 -1.6
201,053 + GFF890 0.41 -0.8
201,053 + GFF890 0.41 -0.5
201,053 + GFF890 0.41 -0.1
201,053 + GFF890 0.41 +1.4
201,053 + GFF890 0.41 -1.7
201,053 + GFF890 0.41 +0.2
201,054 - GFF890 0.41 -0.1
201,054 - GFF890 0.41 -0.5
201,054 - GFF890 0.41 -2.6
201,054 - GFF890 0.41 -0.6
201,054 - GFF890 0.41 +1.3
201,054 - GFF890 0.41 +0.4
201,054 - GFF890 0.41 +0.2
201,099 - GFF890 0.43 +1.0
201,099 - GFF890 0.43 +0.5
201,215 - GFF890 0.49 +0.8

Or see this region's nucleotide sequence